Gene detail

Detailed information of g4860.t1.1 in Astreopora myriophthalma

Genomic Location: :...
NR annotation: XP_044182646.1, LOW QUALITY PROTEIN: hemicentin-1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

g4860.t1

ATGGTTCAATTCTGTAAGAtatcttccttttctttgcaGAACTTGTGCTGCCACGGAATGCGGCAGTTTATGACCTTAGTTTGGGTATTGACTCTAACAGCTGTAGCGGCGGGCACACCAAGCTTTGACACAAGACCGGATGACAAGATTGTTACTGAAGGAACCTCCGTGACATTCCATTGTAATGCAACAGGGAGCCCACAACCAAATATAACTtggacaaaaaaaggaaagattgtGGGAAATGGAGATACACTGAATTTTGTCGCCTTTAGGAATGTCTCTGGAGAATACTGGTGTTTAGCAGACAATGGATTAAATGGGACAGTTAATGCTAGCGCCAGACTTGATGTTCTCTATCCGCCGAGCCTAGCGACAGTACCCAGCGACAAAACTGTCATGGAGAATGCGCTGGCTTCACTGCATTGTCTGGCCATCGGTAACCCTGTGCCGAACATGACCTGGATTAAAGATGGGAACACTGTGGGTACAGGAGAACATCTAAGCTTTAAAGTTAGCAGAAACGACTCTGGGACATACTTGTGCTTAGCGGAGAATGGGCTGAATGGAACTGTCAACGCAAGCGCGTACTTGGATGTGCAATTTAAGCCTGAAAAGACAAATCTGTCCGTCAATGTGGATATCACTAAGCGTGTTCCATTTGGTATGTCCATCAAGTTCAATTGCACCACCTATTCACATCCAGATGCGCACGGATTCAAATTCTACCGTGACCAAGAGCTACTTGGTAGCATCAGCACAGGTTTCTACCATCTGCAACTTCAAAGGAGTGGCATATATTCTTGTGTACCCTTCAACAGTGCGGGAGATGGGGCGAAGGCTAGGCTGGTAATTGAGGTTATGGCTTGGAAGCCATCCTTCGAGAACGATCTTTTCGGTCCGTTTTATCTTTTCAAGGGGATCCAAGCACGTTTACCCTGCAAGCCTTTCGCAGAACCGTATCCAACATTCAAATGGTTCAAGGATGGGATGGCCCTTAGATATGGCAAAAACGAAAGCTACATGGTTGATTCAAATGGCTCACTGGTTATTCGAAAAGTAGAGGAGAGTCACTCTGGAAAGTACACTTGCGTGGCTCGGAACCACTTGGGAGAGACTAATGCAACAGCTTATGAAAGAACAAAGATGGTTGTCAAGCCCCAAAACAGAACAGTCGCGGAGGGCTCGTATGTGGAACTACACTGTAACGCAACTAGGGATGCCTCGTTAGAATTAAGGTACATCTGGAAAAGAGATGGAGCTGATATTACAGGTGACTCCAACATCGAATGGCAGGAGAGATTACATGTCTTGAAACTATCAAACATTAGTTTTGAAGATGCTGGAGTGTACACTTGTGTTGCGTTTACACCCGAACCCAGAGGATCTGAAGACAGGGCGTCAGCTGTTGTGACAATTGAAGGTGCTCCGTCTCCTCCAACCAACATCCAAATAACCGATTGCAGCAACAGGCGAACCAACATTTCGTGGATGCCTGCTATTTCAAATGGCGCCCAAGTAACTCACTATGTAGTTGAACAGGAAACAAATCATGATCCATTTGTCTTCAACGTCATCCCAAAGGTCACCAATCTTAATTCTACGTCATTGTCGTTGGAACTGCCGGGATGGTCGACTCTTCGTTTCCGTGTGAGGGCTGTAAATAACGTTGGACGAAGTCGCCCCAGTGAAGCAACAGCGGAAGGAATTTGTAGTACTCCGGTTGGAGTTCCTCAGATTAACCCAGCGAATTTGAGAGGAATCCCAAAAAAGGCAAACGAGCTCTCTATCGAGTGGACTccCGTGTCCAAAACAGAATGGAACGCACCTGGTTGCTACTATATCCTGAAATACAGACAAGGTAACTCTCGTGAATGGATGACAGAAAAGATTGGGGATCCAAGTGTGAAAAAATTTTCAGTGTCAAATCCCGGATATTACCAGCCCTGGGAGTTCAAGATCTCTGTGGGGAACCACGAAGGCCTCGGACCGGAGAGTCCTATCAGGCACTCGTTTTCCGGTCAGGATGCGCCGGCTGTGAAGCCGGAAAGTGCCAAAATGGAAGTTGTAACTGACAGCAGCGTTGTGCTGGCCtggaaaccagtaaaattaACTCGAGGAAGTGTTGACGGATACAAGatttattactgggttattaaAAGTGACTCAGTAAATTCTCGACGACGAAGGCAAGCCATTCCGAGTGCGGCAAATGTCCTTGATGTAAAGGGAGGCGACACTCGGGAAGTCACTCTGACGGGACTTAAGCCTTACACGAACTATCAAGTGGTAGTCAAAGCATTCAACAGCGGCGGAGAGGGGCCCGCGAGTGACGTTATCGTGGTTGAGACTTCGGAGGGAGAACCTGGCCCACCATCGGATATGCAAACGTTTGCATTCGGAGAGTACATTCTCGTCACTTGGAAACAACCCAGAAAGCCTAATGGTATTATTACAAAATATGAAGTTGGGTTCGCTGAGTACAATGATCCCACGCGCTGGACTGCGCCCGTTTCTATGGAGACCGTTGAGCCTACTGTCTTCAAGAAGCTCCTACGTAATGCAGCATTCGAGACGAGTTATATGGTGGAAGTGAGGGCACAAACCCGTGAAGGGTGGGGCGAGAGCGCTAAAAAGACAGAAACAACAGTCCAGAGATCGGCTCCTGCCAAGCCAAAGGCTCCTACAGTTGTCGGAGCCGGAGAGGACTCTGTCACTGTCATGTATAATTTTGCAGTCGGTGGAGGGTGGACCAATGAGTTCAAAGTTTTGTTCAGAAAGAAAGAGGAAGGTGGCGAATTCCAAGAAACCAATTGGGTGAAGCATTTCCCCAAGAACATAACTGAAATCGGCGATCTTGAGCAAGAGGTTTATCAATTAAAGACTGTTGGTAGAAACACTGTGGGGACAAGTGCCGAGAGTGACATTATAGAGGCCAGTCCAAAGCAGGCTCCTGCGGCCTTCGGTGGTCGAGGCAGCCACTCTGTTTATCGCTCGGATTGGTTCATTACTCTCATGATTATTTCTGCCGGCACACTTCTTCTCCTCGTTATTATTTTTACGTACAGACGTTGGAGGCGACGAGGAAGCGCTGATTTGAAAGTTCCCGAGCATGAGAAGGAAGCAGAAAAAGAGCAAATGGAGCCAGAGACAGGAAGCATATCCGTCGAAATCAAACGGCGTGGAGAATGGAAAAAGTCTCTCCAGGACAGGCTAGATGTAGAATCGCAAGACAGTTTGGACGAATACGGAGGAGAAACTCCGTACTTCACCGAAGACGGTTCTTTCGTAGGTGACTTAGAACAAGGCCGCAAAAGAGAGTCCGTCTATGATGAAATACCTGATCCTACTGTTTAA

Transcript

g4860.t1

Protein

Uniprot

Uniprot term	Description
B8VIW9	Fibronectin type III domain-containing protein OS=Acropora millepora OX=45264 PE=1 SV=1
P35331	Neuronal cell adhesion molecule OS=Gallus gallus OX=9031 PE=1 SV=1
O00533	Neural cell adhesion molecule L1-like protein OS=Homo sapiens OX=9606 GN=CHL1 PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13882	Bravo_FIGEY	Bravo-like intracellular region	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR026966	Domain	Neurofascin/L1/NrCAM, C-terminal domain	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10075	BASIGIN RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0030424	Cellular Component	axon	Interproscan
GO:0070593	Biological Process	dendrite self-avoidance	Interproscan
GO:0098632	Molecular Function	cell-cell adhesion mediator activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06756	NRCAM; neuronal cell adhesion molecule	-	Cell adhesion molecules	ko04514	deepkoala