Gene detail

Detailed information of g4875.t1 in Acropora digitifera

Genomic Location: chr2Alt:34182047...34191867
NR annotation: XP_015767209.1, PREDICTED: aristaless-related homeobox protein-like isoform X2 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O42115	Aristaless-related homeobox protein OS=Danio rerio OX=7955 GN=arx PE=2 SV=1
Q96QS3	Homeobox protein ARX OS=Homo sapiens OX=9606 GN=ARX PE=1 SV=1
O35085	Homeobox protein ARX OS=Mus musculus OX=10090 GN=Arx PE=1 SV=3

Gene family

Family type	Membership / link
Transcription factor family	Homeobox · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan
PF03826 all species →	OAR	OAR motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003654 all species →	Domain	OAR domain	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR050649 all species →	Family	Paired Homeobox Transcription Factors	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24329 all species →	HOMEOBOX PROTEIN ARISTALESS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g4875.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g4875.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

109.0Max TPM

47.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	47.09	108.99

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	108.99
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	96.57
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	87.89
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	73.12
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	70.66
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	59.48
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	58.09
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	56.27
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	54.84
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	54.05
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	52.54
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	51.90
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	51.01
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	50.31
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	49.48
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	46.92
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	46.52
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	46.45
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	44.97
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	43.13
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	40.02
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	39.67
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	39.31
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	36.36
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	35.01
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	34.93
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	34.79
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	34.78
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	33.91
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	33.55
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	32.50
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	31.62
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	31.48
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	31.00
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	30.75
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	30.70
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	29.81
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	28.41
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	24.56

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.