Gene detail

Detailed information of g489.t1 in Acropora digitifera

Genomic Location: chr1Alt:6512872...6540600
NR annotation: XP_029213552.1, dnaJ homolog subfamily C member 3-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13217	DnaJ homolog subfamily C member 3 OS=Homo sapiens OX=9606 GN=DNAJC3 PE=1 SV=1
Q91YW3	DnaJ homolog subfamily C member 3 OS=Mus musculus OX=10090 GN=Dnajc3 PE=1 SV=1
Q5ZI13	DnaJ homolog subfamily C member 3 OS=Gallus gallus OX=9031 GN=DNAJC3 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12895 all species →	ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	Repeat	Interproscan
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13432 all species →	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR051727 all species →	Family	DnaJ Homolog Subfamily C Member 3 Co-Chaperones	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44140 all species →	LD25575P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0034975 all species →	Biological Process	protein folding in endoplasmic reticulum	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0051787 all species →	Molecular Function	misfolded protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09523	DNAJC3; DnaJ homolog subfamily C member 3	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g489.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

98.8Max TPM

49.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	49.29	98.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	98.77
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	84.10
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	84.03
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	80.24
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	74.30
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	70.96
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	68.74
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	64.92
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	62.73
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	62.52
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	62.50
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	58.72
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	57.40
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	56.33
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	55.41
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	51.93
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	50.91
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	47.07
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	46.09
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	43.62
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	42.21
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	40.91
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	40.85
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	40.77
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	39.39
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	36.53
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	36.39
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	35.46
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	34.09
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	33.91
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	33.54
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	33.12
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	31.59
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	31.03
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	28.10
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	27.60
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	27.56
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	25.78
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	22.33

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.