Gene detail

Detailed information of g489.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_029198462.2, fimbrin-like [Acropora millepora]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9FKI0	Fimbrin-5 OS=Arabidopsis thaliana OX=3702 GN=FIM5 PE=1 SV=1
A7E3Q8	Plastin-3 OS=Bos taurus OX=9913 GN=PLS3 PE=2 SV=1
P13797	Plastin-3 OS=Homo sapiens OX=9606 GN=PLS3 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000056 (this species only)
Orthogroup (gene family)	OG0000701 (this species only)
Orthogroup (gene family)	OG0001622 (this species only)
Orthogroup (gene family)	OG0004126 (this species only)
Orthogroup (gene family)	OG0004249 (this species only)
Orthogroup (gene family)	OG0004794 (this species only)
Orthogroup (gene family)	OG0008587 (this species only)
Orthogroup (gene family)	OG0014801 (this species only)
Orthogroup (gene family)	OG0041221 (this species only)
Orthogroup (gene family)	OG0170821 (this species only)
Orthogroup (gene family)	OG0171051 (this species only)
Orthogroup (gene family)	OG0172155 (this species only)
Orthogroup (gene family)	OG0173159 (this species only)
Orthogroup (gene family)	OG0173367 (this species only)
Orthogroup (gene family)	OG0173962 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02990 all species →	EMP70	Endomembrane protein 70	Family	Interproscan
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan
PF04101 all species →	Glyco_tran_28_C	Glycosyltransferase family 28 C-terminal domain	Domain	Interproscan
PF12738 all species →	PTCB-BRCT	twin BRCT domain	Family	Interproscan
PF21298 all species →	TopBP1_BRCT0	TopBP1, BRCT0 domain	Domain	Interproscan
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF21242 all species →	ECT2_PH	ECT2, PH domain	Domain	Interproscan
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004240 all species →	Family	Nonaspanin (TM9SF)	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan
IPR050327 all species →	Family	Proton-linked Monocarboxylate Transporter	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR007235 all species →	Domain	Glycosyl transferase, family 28, C-terminal	Interproscan
IPR039042 all species →	Family	UDP-N-acetylglucosamine transferase subunit Alg13-like	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR026817 all species →	Family	Guanine nucleotide exchange factor Ect2	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR049542 all species →	Domain	DNA topoisomerase 2-binding protein 1-like, BRCT0 domain	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR001331 all species →	Conserved_site	Guanine-nucleotide dissociation stimulator, CDC24, conserved site	Interproscan
IPR049395 all species →	Domain	ECT2, PH domain	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR039959 all species →	Family	Fimbrin/Plastin	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR002126 all species →	Domain	Cadherin-like	Interproscan
IPR039808 all species →	Family	Cadherin	Interproscan
IPR020894 all species →	Conserved_site	Cadherin conserved site	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10766 all species →	TRANSMEMBRANE 9 SUPERFAMILY PROTEIN	Interproscan
PTHR11360 all species →	MONOCARBOXYLATE TRANSPORTER	Interproscan
PTHR12867 all species →	GLYCOSYL TRANSFERASE-RELATED	Interproscan
PTHR16777 all species →	PROTEIN ECT2	Interproscan
PTHR19961 all species →	FIMBRIN/PLASTIN	Interproscan
PTHR44464 all species →	WD REPEAT-CONTAINING PROTEIN 17	Interproscan
PTHR24027 all species →	CADHERIN-23	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0072657 all species →	Biological Process	protein localization to membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0008028 all species →	Molecular Function	monocarboxylic acid transmembrane transporter activity	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0016758 all species →	Molecular Function	hexosyltransferase activity	Interproscan
GO:0006488 all species →	Biological Process	dolichol-linked oligosaccharide biosynthetic process	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0000281 all species →	Biological Process	mitotic cytokinesis	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0007399 all species →	Biological Process	nervous system development	Interproscan
GO:0043547 all species →	Biological Process	positive regulation of GTPase activity	Interproscan
GO:0090630 all species →	Biological Process	activation of GTPase activity	Interproscan
GO:2000431 all species →	Biological Process	regulation of cytokinesis, actomyosin contractile ring assembly	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005884 all species →	Cellular Component	actin filament	Interproscan
GO:0032432 all species →	Cellular Component	actin filament bundle	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0051017 all species →	Biological Process	actin filament bundle assembly	Interproscan
GO:0051639 all species →	Biological Process	actin filament network formation	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016342 all species →	Cellular Component	catenin complex	Interproscan
GO:0045296 all species →	Molecular Function	cadherin binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0098742 all species →	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07432	ALG13; beta-1,4-N-acetylglucosaminyltransferase	EC:2.4.1.141	Glycosyltransferases	ko01003	deepkoala
K20704	ECT2, ARHGEF31; protein ECT2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.