Gene detail

Detailed information of g4897.t1 in Montipora capitata

Genomic Location: Sc0000093:328942...365390
NR annotation: XP_029197633.2, LOW QUALITY PROTEIN: neurogenic locus notch homolog protein 1-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g4897.t1

atgggcgggtttgcaaccgtgattgctttgtgcctcttcattccgatgctagtatctgcctccacgtgtaccgctggcctctgcaaaaatggtggaacttgtataactacccagggaagcgcaaactgcagttgtcctgcaaatttcactggtcccacttgtggggatgatgttgatgagtgttcagtgctggtcagcccatgcaagaatggaggaacatgttcaaaccaccctggtggctatacctgccgctgcattagtggctgggatggatttgattgtgccattaacagagatgactgcatttcatctgacagttatccaaaatgtcagaatggtggcacctgtattgataaagtgggaacatttgcctgcaactgttcagcaaattatatgggtctgacttgccagcatgaaaatcagtgtgtgacactaaacccctgttacggaggtgcaacatgttacccaaatgcctttggccattacagttgtgtatgttcaagtggatggactggacaaaattgcagcactgatattgatgaatgtgcaggtgccagcgggactgcgataccactgtgttaccatggaggcacttgtgcaaatatacctggttcatacaattgtatttgtatttctggacattcaggtcatcattgtgagctcgctataaatgaatgtgattctaatccttgtcaaaatggagctgaatgcgtagattatcctaacagatttgaatgcttttgcaatcctggatatactggtgcgcggtgtgaacaagagattaatgaatgtgatagttccccctgtaaaaacggaggacagtgccatgatctaattgcagcatacaattgtacctgtgttttgggatatggtggcacaaactgtgagacaaacattgatgattgcagtccgaataatccctgtcttaatggcgcaacatgcatagatgatattgcaaacttcaaatgctcatgtgccactggctttactggcagaaaatgtgggacgaatatcgatgactgtcaatcatccccttgtctgcactatggaacatgtgtggatgggatcaatgagtacagctgctcgtgtgttccaggatacactgggaagaattgtgagaaggatttcaatgagtgtaacagtgacccttgtctgaatggcggaacatgccgtgatcttgttaatggctttaaatgtatttgtccccagggcacaaatggtacaatatgcgagcacaatattgatgactgtttacacgtggtctgtaagaatggcggaacttgtaaagatggtcttaatgattattcctgtacctgtcatgatgggttttatggacgtcattgtgagggtaactttgatgagtgtagctcatcaccttgtaggaatggtggatcgtgtaccgatggtgttgctcagtatcattgccaatgccaaccaggattcacagggagaagctgtgaaacattaattgataattgcctggtaaacttttgccaacacggagcaacgtgccactccctgtctaaaagttacaattgtacgtgtcccccaggctacactggccagttttgtcaaattgatattaatgaatgtatgccaaacccatgtaaaaatggatcctgcagagatggcatcaacaagtatgtgtgtgattgttacactggatacgctggcattaactgttcagacaatattgatgattgtcaatccagtccgtgcttacatggatcaaattgcattgaccaagttgatggttttgcatgtgtatgcccacaaggattcactggacagagatgtgaataccacatagatgagtgtctctcatttccctgtcagaatggagccacttgtgttgatgaaataggatcttacagctgctattgtaaacctggttatactggacaaaactgtgaaagtacaattgattggtgccaaagtcgaccttgtaaaaatggaggtacatgcaaacaaactggaatagattttgaatgtatttgtcctgcagaattcacaggtgtcatttgtgatgttgagaagataacttgtgtccaggcagagttaaagataggtggaagtgacgtttgtaaaaatggtggaacatgcttcaatgatcaggacaacattcaatcctgtagttgccttccagggtttactggaagctactgtgaaattaacgtcaactactgtgacagtggaccatgtaagaatggtgctcattgcaatgatggagtggcgaactacacttgcacctgttataaaggattcaccggaagaaactgtgatacagacattgacgactgtgctggaaatccatgtcataatggtgggacatgcactgatctggtggatggttttatctgctcctgtccattaggctttattggtaatacatgtgaaagcaatccaaacgattgtttggaaaatgcctgcttcaatggtggattctgtcaagatggccttaagagcttcacctgtcaatgtccggccggattctctggacttcgctgtgaggttaacattgatgaatgttcatctaatccatgctctcctcttggtacagaaaagtgctattcattagtgaatgactaccgctgcaagtgtaaatgtgggtttttgggcaaaaactgtgaagtcaatataaatgagtgtttgtcaaatccctgtcagaataatggccagtgtcaggatggttcctgtcgacacacttgcttttgcccccatggatttagtggggtaaactgtgagcttgctgtctccacctgtgaagataacccatgccttaatagtggcacttgtcgaaccctagcaaatggtagctatgcttgcacttgcatgcctggtgtcaatggtacacactgtgagttgaatataaatgagtgtgattcatcaccttgtcataacgatgcaacatgtgtggatggatatggttctttttcttgcatatgtccctttggatacactggcaggacatgctcccaaaaaacagacgaatgtgccagctcaccctgcttgcacggtggtacatgtgaagaccttaggggttactacatgtgtaaatgtccagccgcttataaaggagaacgttgtgaaacggaaagggggtgccaacgtaacgactgtgcaaaggagtttaatggtggagattgcaagccacagtgcaataatcgtgcctgtaattatgacggcactgattgttccctcggagtgaaaccctggcaaagttgcactaagataacgtcatctggggagttttgtgacgtcgtattcaaagatggaaagtgcaacccagaatgcaactctcaagagtgcctatttgacggatttgactgtatcaataaatctgtatgcagggatgaaaaatattgtgcagctcactttggcgatgcccagtgtgatcgatcatgcaacaatcgaggatgtttgtacgatggattggattgttccaccttaaagccgcaattggcccaaggaaccctcataattgtacttcgtgttactccacaagtttttcggagtggggcggagaatttcttgtggaagctgtctaaagtgttggaaatcgttgcatttatcaaaacggatgctcaaggggaccaaatgatttactttcgtgaccttgacgctgtgttggcgcgttccaagcgagaagtgcacagagaaacacattacattgttcgacgagcacagtctggtgcgggcacggaagtacacgtgaatctggacaagaggggatgtacacacccagacatatgtatcgatgatgtcgacctagcagcacgttaccttggcgcaatgcagtcctccaacaagttggatttaccttaccccctctatcaggtcaaaggatttcctgcgcctccgactcccacccccaccatccccctgcgcccggtaattcccccactgtacattgcaatgttatgtgtcggaattccgctgttcatcgttggaatgctattaggcggcaagagggtatatgccaaattatgggtccccgagggattcccaagacaccggccccgacgacagccatccacaaggagggaccctgtaggacaggaagtttctctaagatcaatcagtaaaggttcaggaattgaagagaatagcggaagtgcggatggcgagagtagccggtcagatctgactccaccaagggaagctaaacgagtaaaactcgatgagaaacacaatggaggggactcgcgcatatggacgagcctgcataaacaagttgcggacaggacggcaagaagctgccagcttgctcttacaccaccccaggaggggagcgaacgaggtgcgtcggccatcgatgttgatgccaaaggccctggtggcatgacgcccctacatctggctgcttgccgcggtacctttggggatggaagcagcctggatgatgacaaggatagtgatgacagtggagcggctatggtgtccgatctgctgaacctcggcgcaaagtattcgtcaaagacagaccaggaggaaacacctttgcatcttgctgctcgtcactcaagagctgatatgaccaagcgtttactggattccggagcagatgctaattcgcgtgaccggctcaatcgaacaccactacaccttgccattggggctgatgcacagggcgtgtttcagatcttactaagaaatcgtgcgaccgacctcgaagcgagaatggatgatggcacgacgccgttgattttagccgcaagacatgatttaccggaattggtgcggcatcttgtcaaagcgggagtaaaagttaatagcgcggataatcaaggtcgaacagcactgcactgggctgcttctgtcaatagcttagaagtaacaaaagaactactgcggaatggcgccaagaaagacgcgcaagatgaaaagggtcagacaccgctattcttgggttgcagagagggaagcaatcagaccgtgcgacatttgttggtgaactatgctaaccgcaaactagccgataatatggatatgacgccagaagatatcgcaaaacaaaggcaccaccatgatattgtggggttgctgacagactggtcactaggttgtaattctcccaaggccgtacctgcccctacatctccgtctgaggggcatcaatctcccctcacgagcatggcctcgccaccggctacgtcaccacctgcggtggagattcacagtggcaatgggcctgctatggtggctcactttcaggcagcgcgtcctaagacgactactgtaaacagatcccaaggcacaccgcgacagagagctaatcctcacggaaatagcaatacaagtaatgctaaacgaaaaaggaagaaggcaaggactgaagaggaagcttatccagtaatgacttctgtgactacactatcaccaacaacatctttgtcccccacggctaataacgtcgcgacgtcttgcgcaaccgggcctagtttctcgccgaattgcgtgccaatggcaaacggattgccatctttgggaagcgttggcatttcgcccgctgattcgacaacgttttcgccagttcaggcgccgaactctttcgacacacaggcaccaccgtcaccactcgaaatcttatcaccagaggacctggctgatttggagattgacggtttggatgaactggataacatcgttccgtttgatgatccaacggacatgttgtgtgggtttccatccaacactaccgcaggaaactttgaagttatggaccacattgtgccaaccacttcagactgcatgtatataccaaataatgcgcctccagtaaggcgcgccgacctcttagagtgtcaaagactatattcagttcatagtacgccggacttgcatctacagcaccacgattcccggcctattgtatttaatggcagaacttgtagctcagcgcagagggcgcctcctacgccttcacagttggcttcgtaccaggccctaacgaactccaatatgtacccgggtggcggaaacttaatgccaccaagaaaagactatcaaaacaatgactatgcattacaccagccagtgcatttgcaaaaccaactttacatcagagagcagctgcctgtgcgcactttccttcgtgggtatgactgtgtctcgcctcaaaagcctctatcattccccacaccctcccccgactctccgggccagtggtcatcatcatcgtcatcttcatcctgctaa

Transcript

g4897.t1

ATGGGCGGGTTTGCAACCGTGATTGCTTTGTGCCTCTTCATTCCGATGCTAGTATCTGcCTCCACGTGTACCGCTGGCCTCTGCAAAAATGGTGGAACTTGTATAACTACCCAGGGAAGCGCAAACTGCAGTTGTCCTGCAAATTTCACTGGTCCCACTTGTGGGGATGATGTTGATGAGTGTTCAGTGCTGGTCAGCCCATGCAAGAATGGAGGAACATGTTCAAACCACCCTGGTGGCTATACCTGCCGCTGCATTagtggctgggatggatttgaTTGTGCCATTAACAGAGATGACTGCATTTCATCTGACAGTTATCCAAAATGTCAGAATGGTGGCACCTGTATTGATAAAGTGGGAACATTTGCCTGCAACTGTTCAGCAAATTATATGGGTCTGACTTGCCAGCATGAAAATCAGTGTGTGACACTAAACCCCTGTTACGGAGGTGCAACATGTTACCCAAATGCCTTTGGCCATTACAGTTGTGTATGTTCAAGTGGATGGACTGGACAAAATTGCAGCACTGATATTGATGAATGTGCAGGTGCCAGCGGGACTGCGATACCACTGTGTTACCATGGAGGCACTTGTGCAAATATACCTGGTTCATACaattgtatttgtatttctggacattcaGGTCATCATTGTGAGCTCGCTATAAATGAATGTGATTCTAATCCTTGTCAAAATGGAGCTGAATGCGTAGATTATCCTAACAGATTTGAATGCTTTTGCAATCCTGGATATACTGGTGCGCGGTGTGAACAAGAGATTAATGAATGTGATAGTTCCCCCTGTAAAAACGGAGGACAGTGCCATGATCTAATTGCAGCATACAATTGTACCTGTGTTTTGGGATATGGTGGCACAAACTGTGAGACAAACATTGATGATTGCAGTCCGAATAATCCCTGTCTTAATGGCGCAACATGCATAGATGATATTGCAAACTTCAAATGCTCATGTGCCACTGGCTTTACTGGCAGAAAATGTGGGACGAATATCGATGACTGTCAATCATCCCCTTGTCTGCACTATGGAACATGTGTGGATGGGATCAATGAGTACAGCTGCTCGTGTGTTCCAGGATACACTGGGAAGAATTGTGAGAAGGATTTCAATGAGTGTAACAGTGACCCTTGTCTGAATGGCGGAACATGCCGTGATCTTGTTAATGGCTTTAAATGTATTTGTCCCCAGGGCACAAATGGTACAATATGCGAGCACAATATTGATGACTGTTTACACGTGGTCTGTAAGAATGGCGGAACTTGTAAAGATGGTCTTAATGATTATTCCTGTACCTGTCATGATGGGTTTTATGGACGTCATTGTGAGGGTAACTTTGATGAGTGTAGCTCATCACCTTGTAGGAATGGTGGATCGTGTACCGATGGTGTTGCTCAGTATCATTGCCAATGCCAACCAGGATTCACAGGGAGAAGCTGTGAAACATTAATTGATAATTGCCTGGTAAACTTTTGCCAACACGGAGCAACGTGCCACTCCCTGTCTAAAAGTTACAATTGTACGTGTCCCCCAGGCTACACTGGCCAGTTTTGTCAAATTGATATTAATGAATGTATGCCAAACCCATGTAAAAATGGATCCTGCAGAGATGGCATCAACAAGTATGTGTGTGATTGTTACACTGGATACGCTGGCATTAACTGTTCAGACAATATTGATGATTGTCAATCCAGTCCGTGCTTACATGGATCAAATTGCATTGACCAAGTTGATGGTTTTGCATGTGTATGCCCACAAGGATTCACTGGACAGAGATGTGAATACCACATAGATGAGTGTCTCTCATTTCCCTGTCAGAATGGAGCCACTTGTGTTGATGAAATAGGATCTTACAGCTGCTATTGTAAACCTGGTTATACTGGACAAAACTGTGAAAGTACAATTGATTGGTGCCAAAGTCGACCTTGTAAAAATGGAGGTACATGCAAACAAACTGGAATAGATTTTGAATGTATTTGTCCTGCAGAATTCACAGGTGTCATTTGTGATGTTGAGAAGATAACTTGTGTCCAGGCAGAGTTAAAGATAGGTGGAAGTGACGTTTGTAAAAATGGTGGAACATGCTTCAATGATCAGGACAACATTCAATCCTGTAGTTGCCTTCCAGGGTTTACTGGAAGCTACTGTGAAATTAACGTCAACTACTGTGACAGTGGACCATGTAAGAATGGTGCTCATTGCAATGATGGAGTGGCGAACTACACTTGCACCTGTTATAAAGGATTCACCGGAAGAAACTGTGATACAGACATTGACGACTGTGCTGGAAATCCATGTCATAATGGTGGGACATGCACTGATCTGGTGGATGGTTTTATCTGCTCCTGTCCATTAGGCTTTATTGGTAATACATGTGAAAGCAATCCAAACGATTGTTTGGAAAATGCCTGCTTCAATGGTGGATTCTGTCAAGATGGCCTTAAGAGCTTCACCTGTCAATGTCCGGCCGGATTCTCTGGACTTCGCTGTGAGGTTAACATTGATGAATGTTCATCTAATCCATGCTCTCCTCTTGGTACAGAAAAGTGCTATTCATTAGTGAATGACTACCGCTGCAAGTGTAAATGTGGGTTTTTGGGCAAAAACTGTGAAGTCAATATAAATGAGTGTTTGTCAAATCCCTGTCAGAATAATGGCCAGTGTCAGGATGGTTCCTGTCGACACACTTGCTTTTGCCCCCATGGATTTAGTGGGGTAAACTGTGAGCTTGCTGTCTCCACCTGTGAAGATAACCCATGCCTTAATAGTGGCACTTGTCGAACCCTAGCAAATGGTAGCTATGCTTGCACTTGCATGCCTGGTGTCAATGGTACACACTGTGAGTTGAATATAAATGAGTGTGATTCATCACCTTGTCATAACGATGCAACATGTGTGGATGGATATGGTTCTTTTTCTTGCATATGTCCCTTTGGATACACTGGCAGGACATGCTCCCAAAAAACAGACGAATGTGCCAGCTCACCCTGCTTGCACGGTGGTACATGTGAAGACCTTAGGGGTTACTACATGTGTAAATGTCCAGCCGCTTATAAAGGAGAACGTTGTGAAACGGAAAGGGGGTGCCAACGTAACGACTGTGCAAAGGAGTTTAATGGTGGAGATTGCAAGccACAGTGCAATAATCGTGCCTGTAATTATGACGGCACTGATTGTTCCCTCGGAGTGAAACCCTGGCAAAGTTGCACTAAGATAACGTCATCTGGGGAGTTTTGTGACGTCGTATTCAAAGATGGAAAGTGCAACCCAGAATGCAACTCTCAAGAGTGCCTATTTGACGGATTTGACTGTATCAATAAATCTGTATGCAGGGATGAAAAATATTGTGCAGCTCACTTTGGCGATGCCCAGTGTGATCGATCATGCAACAATCGAGGATGTTTGTACGATGGATTGGATTGTTCCACCTTAAAGCCGCAATTGGCCCAAGGAACCCTCATAATTGTACTTCGTGTTACTCCACAAGTTTTTCGGAGTGGGGCGGAGAATTTCTTGTGGAAGCTGTCTAAAGTGTTGGAAATCGTTGCATTTATCAAAACGGATGCTCAAGGGGACCAAATGATTTACTTTCGTGACCTTGACGCTGTGTTGGCGCGTTCCAAGCGAGAAGTGCACAGAGAAACACATTACATTGTTCGACGAGCACAGTCTGGTGCGGGCACGGAAGTACACGTGAATCTGGACAAGAGGGGATGTACACACCCAGACATATGTATCGATGATGTCGACCTAGCAGCACGTTACCTTGGCGCAATGCAGTCCTCCAACAAGTTGGATTTACCTTACCCCCTCTATCAGGTCAAAGGATTTCCTGCGCCTCCGACTCCCACCCCCACCATCCCCCTGCGCCCGGTAATTCCCCCACTGTACATTGCAATGTTATGTGTCGGAATTCCGCTGTTCATCGTTGGAATGCTATTAGGCGGCAAGAGGGTATATGCCAAATTATGGGTCCCCGAGGGATTCCCAAGACACCGGCCCCGACGACAGCCATCCACAAGGAGGGACCCTGTAGGACAGGAAGTTTCTCTAAGATCAATCAGTAAAGGTTCAGGAATTGAAGAGAATAGCGGAAGTGCGGATGGCGAGAGTAGCCGGTCAGATCTGACTCCACCAAGGGAAGCTAAACGAGTAAAACTCGATGAGAAACACAATGGAGGGGACTCGCGCATATGGACGAGCCTGCATAAACAAGTTGCGGACAGGACGGCAAGAAGCTGCCAGCTTGCTCTTACACCACCCCAGGAGGGGAGCGAACGAGGTGCGTCGGCCATCGATGTTGATGCCAAAGGCCCTGGTGGCATGACGCCCCTACATCTGGCTGCTTGCCGCGGTACCTTTGGGGATGGAAGCAGCCTGGATGATGACAAGGATAGTGATGACAGTGGAGCGGCTATGGTGTCCGATCTGCTGAACCTCGGCGCAAAGTATTCGTCAAAGACAGACCAGGAGGAAACACCTTTGCATCTTGCTGCTCGTCACTCAAGAGCTGATATGACCAAGCGTTTACTGGATTCCGGAGCAGATGCTAATTCGCGTGACCGGCTCAATCGAACACCACTACACCTTGCCATTGGGGCTGATGCACAGGGCGTGTTTCAGATCTTACTAAGAAATCGTGCGACCGACCTCGAAGCGAGAATGGATGATGGCACGACGCCGTTGATTTTAGCCGCAAGACATGATTTACCGGAATTGGTGCGGCATCTTGTCAAAGCGGGAGTAAAAGTTAATAGCGCGGATAATCAAGGTCGAACAGCACTGCACTGGGCTGCTTCTGTCAATAGCTTAGAAGTAACAAAAGAACTACTGCGGAATGGCGCCAAGAAAGACGCGCAAGATGAAAAGGGTCAGACACCGCTATTCTTGGGTTGCAGAGAGGGAAGCAATCAGACCGTGCGACATTTGTTGGTGAACTATGCTAACCGCAAACTAGCCGATAATATGGATATGACGCCAGAAGATATCGCAAAACAAAGGCACCACCATGATATTGTGGGGTTGCTGACAGACTGGTCACTAGGTTGTAATTCTCCCAAGGCCGTACCTGCCCCTACATCTCCGTCTGAGGGGCATCAATCTCCCCTCACGAGCATGGCCTCGCCACCGGCTACGTCACCACCTGCGGTGGAGATTCACAGTGGCAATGGGCCTGCTATGGTGGCTCACTTTCAGGCAGCGCGTCCTAAGACGACTACTGTAAACAGATCCCAAGGCACACCGCGACAGAGAGCTAATCCTCACGGAAATAGCAATACAAGTAATGCTAAACGAAAAAGGAAGAAGGCAAGGACTGAAGAGGAAGCTTATCCAGTAATGACTTCTGTGACTACACTATCACCAACAACATCTTTGTCCCCCACGGCTAATAACGTCGCGACGTCTTGCGCAACCGGGCCTAGTTTCTCGCCGAATTGCGTGCCAATGGCAAACGGATTGCCATCTTTGGGAAGCGTTGGCATTTCGCCCGCTGATTCGACAACGTTTTCGCCAGTTCAGGCGCCGAACTCTTTCGACACACAGGCACCACCGTCACCACTCGAAATCTTATCACCAGAGGACCTGGCTGATTTGGAGATTGACGGTTTGGATGAACTGGATAACATCGTTCCGTTTGATGATCCAACGGACATGTTGTGTGGGTTTCCATCCAACACTACCGCAGGAAACTTTGAAGTTATGGACCACATTGTGCCAACCACTTCAGACTGCATGTATATACCAAATAATGCGCCTCCAGTAAGGCGCGCCGACCTCTTAGAGTGTCAAAGACTATATTCAGTTCATAGTACGCCGGACTTGCATCTACAGCACCACGATTCCCGGCCTATTGTATTTAATGGCAGAACTTGTAGCTCAGCGCAGAGGGCGCCTCCTACGCCTTCACAGTTGGCTTCGTACCAGGCCCTAACGAACTCCAATATGTACCCGGGTGGCGGAAACTTAATGCCACCAAGAAAAGACTATCAAAACAATGACTATGCATTACACCAGCCAGTGCATTTGCAAAACCAACTTTACATCAGAGAGCAGCTGCCTGTGCGCACTTTCCTTCGTGGGTATGACTGTGTCTCGCCTCAAAAGCCTCTATCATTCCCCACACCCTCCCCCGACTCTCCGGGCCAgtggtcatcatcatcgtcatcttcatccTGCTAA

Protein

g4897.t1

MGGFATVIALCLFIPMLVSASTCTAGLCKNGGTCITTQGSANCSCPANFTGPTCGDDVDECSVLVSPCKNGGTCSNHPGGYTCRCISGWDGFDCAINRDDCISSDSYPKCQNGGTCIDKVGTFACNCSANYMGLTCQHENQCVTLNPCYGGATCYPNAFGHYSCVCSSGWTGQNCSTDIDECAGASGTAIPLCYHGGTCANIPGSYNCICISGHSGHHCELAINECDSNPCQNGAECVDYPNRFECFCNPGYTGARCEQEINECDSSPCKNGGQCHDLIAAYNCTCVLGYGGTNCETNIDDCSPNNPCLNGATCIDDIANFKCSCATGFTGRKCGTNIDDCQSSPCLHYGTCVDGINEYSCSCVPGYTGKNCEKDFNECNSDPCLNGGTCRDLVNGFKCICPQGTNGTICEHNIDDCLHVVCKNGGTCKDGLNDYSCTCHDGFYGRHCEGNFDECSSSPCRNGGSCTDGVAQYHCQCQPGFTGRSCETLIDNCLVNFCQHGATCHSLSKSYNCTCPPGYTGQFCQIDINECMPNPCKNGSCRDGINKYVCDCYTGYAGINCSDNIDDCQSSPCLHGSNCIDQVDGFACVCPQGFTGQRCEYHIDECLSFPCQNGATCVDEIGSYSCYCKPGYTGQNCESTIDWCQSRPCKNGGTCKQTGIDFECICPAEFTGVICDVEKITCVQAELKIGGSDVCKNGGTCFNDQDNIQSCSCLPGFTGSYCEINVNYCDSGPCKNGAHCNDGVANYTCTCYKGFTGRNCDTDIDDCAGNPCHNGGTCTDLVDGFICSCPLGFIGNTCESNPNDCLENACFNGGFCQDGLKSFTCQCPAGFSGLRCEVNIDECSSNPCSPLGTEKCYSLVNDYRCKCKCGFLGKNCEVNINECLSNPCQNNGQCQDGSCRHTCFCPHGFSGVNCELAVSTCEDNPCLNSGTCRTLANGSYACTCMPGVNGTHCELNINECDSSPCHNDATCVDGYGSFSCICPFGYTGRTCSQKTDECASSPCLHGGTCEDLRGYYMCKCPAAYKGERCETERGCQRNDCAKEFNGGDCKPQCNNRACNYDGTDCSLGVKPWQSCTKITSSGEFCDVVFKDGKCNPECNSQECLFDGFDCINKSVCRDEKYCAAHFGDAQCDRSCNNRGCLYDGLDCSTLKPQLAQGTLIIVLRVTPQVFRSGAENFLWKLSKVLEIVAFIKTDAQGDQMIYFRDLDAVLARSKREVHRETHYIVRRAQSGAGTEVHVNLDKRGCTHPDICIDDVDLAARYLGAMQSSNKLDLPYPLYQVKGFPAPPTPTPTIPLRPVIPPLYIAMLCVGIPLFIVGMLLGGKRVYAKLWVPEGFPRHRPRRQPSTRRDPVGQEVSLRSISKGSGIEENSGSADGESSRSDLTPPREAKRVKLDEKHNGGDSRIWTSLHKQVADRTARSCQLALTPPQEGSERGASAIDVDAKGPGGMTPLHLAACRGTFGDGSSLDDDKDSDDSGAAMVSDLLNLGAKYSSKTDQEETPLHLAARHSRADMTKRLLDSGADANSRDRLNRTPLHLAIGADAQGVFQILLRNRATDLEARMDDGTTPLILAARHDLPELVRHLVKAGVKVNSADNQGRTALHWAASVNSLEVTKELLRNGAKKDAQDEKGQTPLFLGCREGSNQTVRHLLVNYANRKLADNMDMTPEDIAKQRHHHDIVGLLTDWSLGCNSPKAVPAPTSPSEGHQSPLTSMASPPATSPPAVEIHSGNGPAMVAHFQAARPKTTTVNRSQGTPRQRANPHGNSNTSNAKRKRKKARTEEEAYPVMTSVTTLSPTTSLSPTANNVATSCATGPSFSPNCVPMANGLPSLGSVGISPADSTTFSPVQAPNSFDTQAPPSPLEILSPEDLADLEIDGLDELDNIVPFDDPTDMLCGFPSNTTAGNFEVMDHIVPTTSDCMYIPNNAPPVRRADLLECQRLYSVHSTPDLHLQHHDSRPIVFNGRTCSSAQRAPPTPSQLASYQALTNSNMYPGGGNLMPPRKDYQNNDYALHQPVHLQNQLYIREQLPVRTFLRGYDCVSPQKPLSFPTPSPDSPGQWSSSSSSSSC

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q04721	Neurogenic locus notch homolog protein 2 OS=Homo sapiens OX=9606 GN=NOTCH2 PE=1 SV=3
O35516	Neurogenic locus notch homolog protein 2 OS=Mus musculus OX=10090 GN=Notch2 PE=1 SV=2
Q9QW30	Neurogenic locus notch homolog protein 2 OS=Rattus norvegicus OX=10116 GN=Notch2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003337 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF13857 all species →	Ank_5	Ankyrin repeats (many copies)	Repeat	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF00066 all species →	Notch	LNR domain	Domain	Interproscan
PF07684 all species →	NODP	NOTCH protein	Family	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF06816 all species →	NOD	NOTCH protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR035993 all species →	Homologous_superfamily	Notch-like domain superfamily	Interproscan
IPR051022 all species →	Family	Notch Signaling and Cell Fate Determination	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR000800 all species →	Domain	Notch domain	Interproscan
IPR008297 all species →	Family	Notch	Interproscan
IPR011656 all species →	Domain	Notch, NODP domain	Interproscan
IPR010660 all species →	Domain	Notch, NOD domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049 all species →	CRUMBS FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0050793 all species →	Biological Process	regulation of developmental process	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02599	NOTCH1; Notch 1	-	Endocrine resistance	ko01522	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g4897.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

50.0Max TPM

20.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	20.41	47.23
whole organisms · low pH treatment	15	15	19.77	50.02
whole organisms · extra low pH treatment pH treatment	12	12	20.40	43.04

Per sample · hover a bar for the full sample record

Show the sample table (48 samples)

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	47.23
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	33.89
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	33.87
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	30.90
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	30.33
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	30.29
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	30.18
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	30.07
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	28.24
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	20.08
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	18.74
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	18.50
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	17.27
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	17.19
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	14.33
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	13.32
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	3.50
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	3.49
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	3.41
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	2.05
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	1.74
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	50.02
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	39.75
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	36.44
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	21.86
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	20.61
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	19.65
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	19.44
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	18.52
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	16.85
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	16.70
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	16.21
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	12.53
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	3.30
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	2.69
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	1.93
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	43.04
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	33.58
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	31.57
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	31.31
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	27.27
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	20.26
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	19.47
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	16.61
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	14.47
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	2.95
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	2.61
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	1.67

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora capitata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

Direction	Partners	Most correlated partner	PCC
Positively correlated	24	g28086.t1	0.960286005667607
Negatively correlated	17	g5302.t1	-0.899062430993502

Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora capitata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	ready	open →
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →