Genomic Location: not available for this species
NR annotation: CAH3150845.1, unnamed protein product [Porites lobata]
Species Calvadosia cruxmelitensis · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| Q8IY50 | Solute carrier family 35 member F3 OS=Homo sapiens OX=9606 GN=SLC35F3 PE=1 SV=2 |
| Q1LZI2 | Solute carrier family 35 member F3 OS=Mus musculus OX=10090 GN=Slc35f3 PE=2 SV=1 |
| Q8BZK4 | Solute carrier family 35 member F4 OS=Mus musculus OX=10090 GN=Slc35f4 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000005 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000039 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000776 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0000841 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0001268 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0001287 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0001559 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0006996 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0017797 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0049947 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03637 all species → | Mob1_phocein | Mob1/phocein family | Family | Interproscan |
| PF00078 all species → | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF01549 all species → | ShK | ShK domain-like | Domain | Interproscan |
| PF01400 all species → | Astacin | Astacin (Peptidase family M12A) | Domain | Interproscan |
| PF04494 all species → | TFIID_NTD2 | WD40 associated region in TFIID subunit, NTD2 domain | Family | Interproscan |
| PF00024 all species → | PAN_1 | PAN domain | Domain | Interproscan |
| PF10545 all species → | MADF_DNA_bdg | Alcohol dehydrogenase transcription factor Myb/SANT-like | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009030 all species → | Homologous_superfamily | Growth factor receptor cysteine-rich domain superfamily | Interproscan |
| IPR005301 all species → | Family | MOB kinase activator family | Interproscan |
| IPR036703 all species → | Homologous_superfamily | MOB kinase activator superfamily | Interproscan |
| IPR000477 all species → | Domain | Reverse transcriptase domain | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR049680 all species → | Family | Solute carrier family 49-like | Interproscan |
| IPR036259 all species → | Homologous_superfamily | MFS transporter superfamily | Interproscan |
| IPR001506 all species → | Domain | Peptidase M12A | Interproscan |
| IPR003582 all species → | Domain | ShKT domain | Interproscan |
| IPR034035 all species → | Domain | Astacin-like metallopeptidase domain | Interproscan |
| IPR006026 all species → | Domain | Peptidase, metallopeptidase | Interproscan |
| IPR024079 all species → | Homologous_superfamily | Metallopeptidase, catalytic domain superfamily | Interproscan |
| IPR026505 all species → | Family | Solute carrier family 35 member F3/F4 | Interproscan |
| IPR037264 all species → | Homologous_superfamily | TFIID subunit TAF5, NTD2 domain superfamily | Interproscan |
| IPR007582 all species → | Domain | TFIID subunit TAF5, NTD2 domain | Interproscan |
| IPR003609 all species → | Domain | PAN/Apple domain | Interproscan |
| IPR039353 all species → | Family | Transcription factor Adf-1 | Interproscan |
| IPR006578 all species → | Domain | MADF domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22599 all species → | MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB | Interproscan |
| PTHR47027 all species → | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| PTHR10924 all species → | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED | Interproscan |
| PTHR10127 all species → | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING | Interproscan |
| PTHR19346 all species → | UNCHARACTERIZED | Interproscan |
| PTHR19879 all species → | TRANSCRIPTION INITIATION FACTOR TFIID | Interproscan |
| PTHR12243 all species → | MADF DOMAIN TRANSCRIPTION FACTOR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0051184 all species → | Molecular Function | obsolete cofactor transmembrane transporter activity | Interproscan |
| GO:0004222 all species → | Molecular Function | metalloendopeptidase activity | Interproscan |
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
| GO:0008237 all species → | Molecular Function | metallopeptidase activity | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0005669 all species → | Cellular Component | transcription factor TFIID complex | Interproscan |
| GO:0006367 all species → | Biological Process | transcription initiation at RNA polymerase II promoter | Interproscan |
| GO:0016251 all species → | Molecular Function | RNA polymerase II general transcription initiation factor activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00444 | WNT5; wingless-type MMTV integration site family, member 5 | - | Glycosaminoglycan binding proteins | ko00536 | deepkoala |
Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
