Gene detail

Detailed information of g4904.t2 in Acropora digitifera

Genomic Location: chr2Alt:34575397...34584274
NR annotation: XP_029193200.2, tyrosine-protein phosphatase non-receptor type 9-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr2Alt.g4904.t2

AGTATCCCTTTTATTTACCCTTTCACTCCTAAGGGGTTCCCCATTGATGAGTAACATCATCTGGCATTAGACAGAGTGAAATCTACAAGTTTCAGTGGCACTTATGAGAGTGAAAGGATTGGGGACATTTTTGGCTGAACCTAGATGTTGTTAAGTATGTTGGCTAAAACCTGATGGCTACTATTGGCTCTCTTCCTGAACATCATTTGAATAAAGGAAAGTTAATATTGTGGACCAGTGGATATTCGGTTGAAATTTTTCTTGAACTTCAGTCAAAGCACTTGTGCTCGCTTCGTACCAATGTGAATTGTGACCACAGACATCCCAAGTTTACGACTCGATGAGCTACCTCTTTCTCTGATCAGCGGGTAACTTTACAAGAAAACAGTTGTTAGAAAGATGGCGGAAATAGGGGAGATAGTGAGATCAGAAAATGAACAGGAGGTGAGATACACAGATGCAGTCCAATATTCTATAATCCTCCCAAAGCGTTCAATAAGCCTAAAGATGACTTGTTTTTGTGGTGGTCTTTCGCAGGCGATCGCAGTTTTCTTGGCAGTAGTCAACAAAGATCGTCAAGAAAATGGCTTAAGTCCGGTCGGTACTTCTAAAGCTTTGATGTTTTTGATGGCCAAGAAATTTAATGCTGAGAGAGCCATTAATTTGTACAAACGATATCAGAGTGAACGTCGACTGTATTATTTCCAAGAAATAGCTCCATATGAGGAACCATTGCGATCTGAATTACTTAGTGGAAAGTTTACAATTTTGAATGCACGAGACCCAGGTGGGGCAGCTATTGCTGTCTTTTCAGCACGACTTCATTTTCCTGCTGCAACCAGCCATAAGACAGTCATACAGGGAATAGTATTTCAGTTAGATGAGTGCCTCAAAAGTAAGGAAACTCAAAAGAATGGATTGGTTCTAGTGTATGATATGACAGGATCAGCCTATCATAACTTTGATTACAGTCTTGCTCGAAAGATTATCAACCTACTGAAGGGTGGCTATCCAGCAAGGCTCAAGAATGTGTTTGTAATTTCTCCACCATTATGGTTCAAAGCAGTCTTAGCAATTTTCTTGAACTTTCTGCAAGACAAACTCAAGCAGAGAATTGAGGTTGTTCCCAAAGAAATGTTGCTTCAAAGACTTCCTGTGTCTTCGATTCCGGAACAGTTAGGTGGGACCCTTGAGGTGGACCACTTAGCTTGGCTTAACATTTGCTTGGCATCTTTTTCTGAGAGAGAATCAGAAAGTGCAAACTGCAATGGAAATAATGACTCTGAAAGAGGTGAAGGATTTGCTGGCAACATCTCAAGGAAGGGTGCATCTTCAATGCTTGGAGAGAATGATGGACTGTCAAATGAGGGTTCTCTGTCAGCAATGGAGTTTCTTGAACGCATGATGACGTTGAAAAAGGAAGGCATAGAGAATGAGTTTATTGAATTAAGGAAACATGCTGGGAGTGAAAATTTTCTATCAGGAAAATTACCAGAAAACGCAAAGAAGAATAGATACGTAGATGTACCTTGTCTTGAAGAGTCACGAGTGAAACTGTTAGAGTTGGGAATGGATTTGAACACAAACTACATACATGCGAACTTCATGGATGGATACAAACACCCAAAGGCATACATAGCAACGCAAGGACCACTGCCACACACTCAAGGCGATTTTTGGCAAATGGCCTGGGAACAACAGGTCTATGTCATCATCATGGTAACAAGGTGTATCGAAAGAAGTCGCATGAAATGCATTCGGTACTGGCCAGAGAATTGTGAAACGCAAGAATTTTCAACGGTTGATGTCACGCACCAAGAGACATTGGAATTCGAGGATCACGTTGAGAGAACGTTTAGTTTGAAGCACAGAAAGTCTGGAAAAACACGCCGAATAAGGCATTTTCAAATGACTTCGTGGCCGGATTTTGGTGTACCCTCCTCGGCGGAATCTTGTCTTCATGTTGTTGGTCTTGTCCGTGAGGCCCAGGCGGATGCTGTACAATCCCTGGGGTCGGAATGGACGGGACATCCCAAGGGGCCCCCAATAATTATCCACTGCAGTGCCGGGATCGGTCGTACGGGCACGTTTTGCACGATTGATGTGAACGTTGATCGTTTGGCGGACATTGGCAAATGCGAGGTGTTTAACACAGTCAAACAGTTTAGGGCTCAAAGAGCCTTGACTATTCAGACAGCTGAACAGTACGAGTTTTGTTACGTGGCCATTTTGGAGCATACGCTGAATACTCCGAGTGCCAGCGCGGAGGAGAAGGAAGCTATCAGAGACTTTTTGGCGGGGTGGAAAACGCAAGCGAGAAAGTTCAGTGATGCAGATTGAAGTATTGTTGCGGCGTTTTAGGTATCGTTTGGGTCCTATTGTTTGATAAAACTGGATTCTTTTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q641Z2	Tyrosine-protein phosphatase non-receptor type 9 OS=Rattus norvegicus OX=10116 GN=Ptpn9 PE=2 SV=1
O35239	Tyrosine-protein phosphatase non-receptor type 9 OS=Mus musculus OX=10090 GN=Ptpn9 PE=1 SV=2
P43378	Tyrosine-protein phosphatase non-receptor type 9 OS=Homo sapiens OX=9606 GN=PTPN9 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102 all species →	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF00650 all species →	CRAL_TRIO	CRAL/TRIO domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001251 all species →	Domain	CRAL-TRIO lipid binding domain	Interproscan
IPR036865 all species →	Homologous_superfamily	CRAL-TRIO lipid binding domain superfamily	Interproscan
IPR000242 all species →	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR050348 all species →	Family	Protein-Tyrosine Phosphatase	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR003595 all species →	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19134 all species →	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18038	PTPN9, MEG2; tyrosine-protein phosphatase non-receptor type 9	EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g4904.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.