Gene detail

Detailed information of g492.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAH3038859.1, unnamed protein product [Pocillopora meandrina]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60942	mRNA-capping enzyme OS=Homo sapiens OX=9606 GN=RNGTT PE=1 SV=1
O55236	mRNA-capping enzyme OS=Mus musculus OX=10090 GN=Rngtt PE=1 SV=1
Q6NY98	mRNA-capping enzyme OS=Danio rerio OX=7955 GN=rngtt PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000005 (this species only)
Orthogroup (gene family)	OG0000705 (this species only)
Orthogroup (gene family)	OG0000778 (this species only)
Orthogroup (gene family)	OG0002525 (this species only)
Orthogroup (gene family)	OG0002657 (this species only)
Orthogroup (gene family)	OG0003518 (this species only)
Orthogroup (gene family)	OG0005234 (this species only)
Orthogroup (gene family)	OG0008079 (this species only)
Orthogroup (gene family)	OG0011992 (this species only)
Orthogroup (gene family)	OG0024475 (this species only)
Orthogroup (gene family)	OG0048317 (this species only)
Orthogroup (gene family)	OG0048349 (this species only)
Orthogroup (gene family)	OG0080545 (this species only)
Orthogroup (gene family)	OG0172183 (this species only)
Orthogroup (gene family)	OG0174633 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06470 all species →	SMC_hinge	SMC proteins Flexible Hinge Domain	Domain	Interproscan
PF09587 all species →	PGA_cap	Bacterial capsule synthesis protein PGA_cap	Domain	Interproscan
PF00782 all species →	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan
PF03919 all species →	mRNA_cap_C	mRNA capping enzyme, C-terminal domain	Domain	Interproscan
PF01331 all species →	mRNA_cap_enzyme	mRNA capping enzyme, catalytic domain	Domain	Interproscan
PF19745 all species →	FUT8_N_cat	Alpha-(1,6)-fucosyltransferase N- and catalytic domains	Domain	Interproscan
PF00050 all species →	Kazal_1	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF01607 all species →	CBM_14	Chitin binding Peritrophin-A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010935 all species →	Domain	SMCs flexible hinge	Interproscan
IPR036277 all species →	Homologous_superfamily	SMCs flexible hinge superfamily	Interproscan
IPR019079 all species →	Domain	Capsule synthesis protein, CapA	Interproscan
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR052169 all species →	Family	Cell Wall Biosynthesis Accessory Protein	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR020422 all species →	Domain	Dual specificity protein phosphatase domain	Interproscan
IPR000340 all species →	Domain	Dual specificity phosphatase, catalytic domain	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR013846 all species →	Domain	mRNA capping enzyme, C-terminal	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR051029 all species →	Family	mRNA Capping Enzyme and RNA Phosphatase	Interproscan
IPR001339 all species →	Domain	mRNA capping enzyme, adenylation domain	Interproscan
IPR027350 all species →	Domain	Glycosyltransferase family 23 (GT23) domain	Interproscan
IPR045573 all species →	Domain	Alpha-(1,6)-fucosyltransferase, N- and catalytic domain	Interproscan
IPR002557 all species →	Domain	Chitin binding domain	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR051940 all species →	Family	Chitin-binding developmental regulator	Interproscan
IPR036508 all species →	Homologous_superfamily	Chitin binding domain superfamily	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR001494 all species →	Domain	Importin-beta, N-terminal domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR044189 all species →	Family	Exportin 4/7-like	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18937 all species →	STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER	Interproscan
PTHR45615 all species →	MYOSIN HEAVY CHAIN, NON-MUSCLE	Interproscan
PTHR33393 all species →	POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED	Interproscan
PTHR10367 all species →	MRNA-CAPPING ENZYME	Interproscan
PTHR13132 all species →	ALPHA- 1,6 -FUCOSYLTRANSFERASE	Interproscan
PTHR23301 all species →	CHITIN BINDING PERITROPHIN-A	Interproscan
PTHR12596 all species →	EXPORTIN 4,7-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000799 all species →	Cellular Component	condensin complex	Interproscan
GO:0007076 all species →	Biological Process	mitotic chromosome condensation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0051276 all species →	Biological Process	chromosome organization	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0004484 all species →	Molecular Function	mRNA guanylyltransferase activity	Interproscan
GO:0006370 all species →	Biological Process	7-methylguanosine mRNA capping	Interproscan
GO:0006487 all species →	Biological Process	protein N-linked glycosylation	Interproscan
GO:0036071 all species →	Biological Process	N-glycan fucosylation	Interproscan
GO:0046921 all species →	Molecular Function	alpha-(1->6)-fucosyltransferase activity	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0008061 all species →	Molecular Function	chitin binding	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0005049 all species →	Molecular Function	nuclear export signal receptor activity	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006611 all species →	Biological Process	protein export from nucleus	Interproscan
GO:0051169 all species →	Biological Process	nuclear transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13917	RNGTT; mRNA-capping enzyme	EC:2.7.7.50 EC:3.6.1.74	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.