Detailed information of g495.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_001626535.2, translation machinery-associated protein 16 [Nematostella vectensis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q5RC80RNA-binding protein 39 OS=Pongo abelii OX=9601 GN=RBM39 PE=2 SV=1
Q14498RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39 PE=1 SV=2
Q8VH51RNA-binding protein 39 OS=Mus musculus OX=10090 GN=Rbm39 PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilyHomeobox

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00665rveIntegrase core domainDomainInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF15519RBM39linkerlinker between RRM2 and RRM3 domains in RBM39 proteinDomainInterproscan
PF00046HomeodomainHomeodomainDomainInterproscan
PF00763THF_DHG_CYHTetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domainDomainInterproscan
PF04268SoxGSarcosine oxidase, gamma subunit family FamilyInterproscan
PF02882THF_DHG_CYH_CTetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domainDomainInterproscan
PF11176Tma16Translation machinery-associated protein 16 FamilyInterproscan
PF00261TropomyosinTropomyosinCoiled-coilInterproscan
PF10223MenorinMenorinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003609DomainPAN/Apple domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR003954DomainRNA recognition motif domain, eukaryoteInterproscan
IPR006509FamilySplicing factor, RBM39-likeInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR029123DomainSplicing factor RBM39, linkerInterproscan
IPR050649FamilyPaired Homeobox Transcription FactorsInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR001356DomainHomeobox domainInterproscan
IPR017970Conserved_siteHomeobox, conserved siteInterproscan
IPR020630DomainTetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domainInterproscan
IPR036291Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR046346Homologous_superfamilyAminoacid dehydrogenase-like, N-terminal domain superfamilyInterproscan
IPR007375FamilySarcosine oxidase, gamma subunitInterproscan
IPR000672FamilyTetrahydrofolate dehydrogenase/cyclohydrolaseInterproscan
IPR020631DomainTetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domainInterproscan
IPR038356Homologous_superfamilyTma16 superfamilyInterproscan
IPR021346FamilyTranslation machinery-associated protein 16Interproscan
IPR000533FamilyTropomyosinInterproscan
IPR019356FamilyMenorinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37984PROTEIN CBG26694Interproscan
PTHR48036SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATEDInterproscan
PTHR24329HOMEOBOX PROTEIN ARISTALESSInterproscan
PTHR48099C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATEDInterproscan
PTHR46704CXC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR13349UNCHARACTERIZEDInterproscan
PTHR19269TROPOMYOSINInterproscan
PTHR21184MENORIN (DENDRITIC BRANCHING PROTEIN)Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006397Biological ProcessmRNA processingInterproscan
GO:1990446Molecular FunctionU1 snRNP bindingInterproscan
GO:0000977Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0004488Molecular Functionmethylenetetrahydrofolate dehydrogenase (NADP+) activityInterproscan
GO:0004477Molecular Functionmethenyltetrahydrofolate cyclohydrolase activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0035999Biological Processtetrahydrofolate interconversionInterproscan
GO:0005884Cellular Componentactin filamentInterproscan
GO:0006936Biological Processmuscle contractionInterproscan
GO:0007015Biological Processactin filament organizationInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13091RBM23_39; RNA-binding protein 23/39-Ribosome biogenesisko03009deepkoala
Spliceosomeko03041deepkoala

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