Genomic Location: :...
NR annotation: BBB94186.1, tropomyosin-1 [Aurelia sp. 2017-HT]
| CDS | |||||
| Transcript |
| Protein |
| Uniprot term | Description |
|---|---|
| Q5RC80 | RNA-binding protein 39 OS=Pongo abelii OX=9601 GN=RBM39 PE=2 SV=1 |
| Q14498 | RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39 PE=1 SV=2 |
| Q8VH51 | RNA-binding protein 39 OS=Mus musculus OX=10090 GN=Rbm39 PE=1 SV=2 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif | Domain | Interproscan |
| PF15519 | RBM39linker | linker between RRM2 and RRM3 domains in RBM39 protein | Domain | Interproscan |
| PF00261 | Tropomyosin | Tropomyosin | Coiled-coil | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000504 | Domain | RNA recognition motif domain | Interproscan |
| IPR006509 | Family | Splicing factor, RBM39-like | Interproscan |
| IPR035979 | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR012677 | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR003954 | Domain | RNA recognition motif domain, eukaryote | Interproscan |
| IPR029123 | Domain | Splicing factor RBM39, linker | Interproscan |
| IPR000533 | Family | Tropomyosin | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR48036 | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | Interproscan |
| PTHR19269 | TROPOMYOSIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006397 | Biological Process | mRNA processing | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:1990446 | Molecular Function | U1 snRNP binding | Interproscan |
| GO:0005884 | Cellular Component | actin filament | Interproscan |
| GO:0006936 | Biological Process | muscle contraction | Interproscan |
| GO:0007015 | Biological Process | actin filament organization | Interproscan |
| GO:0051015 | Molecular Function | actin filament binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K13091 | RBM23_39; RNA-binding protein 23/39 | - | Spliceosome | ko03041 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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