Detailed information of g498.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_047140746.1, nuclear cap-binding protein subunit 1 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q6DIE2Nuclear cap-binding protein subunit 1 OS=Xenopus tropicalis OX=8364 GN=ncbp1 PE=2 SV=1
Q6GQD0Nuclear cap-binding protein subunit 1-B OS=Xenopus laevis OX=8355 GN=ncbp1-b PE=2 SV=1
Q6GQ80Nuclear cap-binding protein subunit 1-A OS=Xenopus laevis OX=8355 GN=ncbp1-a PE=2 SV=1
Gene familySubfamily
Transcription Factors Familyzf-C2H2
Transcription Factors Familyzf-BED

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13023HD_3HD domainDomainInterproscan
PF00629MAMMAM domain, meprin/A5/muDomainInterproscan
PF13465zf-H2C2_2Zinc-finger double domainDomainInterproscan
PF04814HNF-1_NHepatocyte nuclear factor 1 (HNF-1), N terminusFamilyInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF04130GCP_C_terminalGamma tubulin complex component C-terminalDomainInterproscan
PF00071RasRas familyDomainInterproscan
PF00282Pyridoxal_deCPyridoxal-dependent decarboxylase conserved domainDomainInterproscan
PF02854MIF4GMIF4G domainRepeatInterproscan
PF09090MIF4G_like_2MIF4G likeRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039356Family5'-deoxynucleotidase YfbR/HDDC2Interproscan
IPR006674DomainHD domainInterproscan
IPR003607DomainHD/PDEase domainInterproscan
IPR000998DomainMAM domainInterproscan
IPR051560FamilyMAM domain-containing proteinInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR010982Homologous_superfamilyLambda repressor-like, DNA-binding domain superfamilyInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR006899DomainHepatocyte nuclear factor 1, N-terminalInterproscan
IPR044869DomainHNF-1, POU-specific (POUs) atypical domainInterproscan
IPR050329FamilyGLI C2H2-type zinc-fingerInterproscan
IPR040457DomainGamma tubulin complex component, C-terminalInterproscan
IPR042241Homologous_superfamilyGamma-tubulin complex component, C-terminal domain superfamilyInterproscan
IPR007259FamilyGamma-tubulin complex component proteinInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001806FamilySmall GTPaseInterproscan
IPR051065FamilyRas-related small GTPaseInterproscan
IPR005225DomainSmall GTP-binding protein domainInterproscan
IPR015424Homologous_superfamilyPyridoxal phosphate-dependent transferaseInterproscan
IPR002129FamilyPyridoxal phosphate-dependent decarboxylaseInterproscan
IPR015421Homologous_superfamilyPyridoxal phosphate-dependent transferase, major domainInterproscan
IPR006600DomainHTH CenpB-type DNA-binding domainInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR027159FamilyNuclear cap-binding protein subunit 1Interproscan
IPR003890DomainMIF4G-like, type 3Interproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR015174DomainMIF4G-like, type 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11845UNCHARACTERIZEDInterproscan
PTHR23282APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.Interproscan
PTHR15722IFT140/172-RELATEDInterproscan
PTHR19818ZINC FINGER PROTEIN ZIC AND GLIInterproscan
PTHR19302GAMMA TUBULIN COMPLEX PROTEINInterproscan
PTHR45704RAS-LIKE FAMILY MEMBER 11Interproscan
PTHR11999GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASEInterproscan
PTHR24342SERINE/THREONINE-PROTEIN KINASE 17Interproscan
PTHR12412CAP BINDING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0002953Molecular Function5'-deoxynucleotidase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005930Cellular ComponentaxonemeInterproscan
GO:0030992Cellular Componentintraciliary transport particle BInterproscan
GO:0036064Cellular Componentciliary basal bodyInterproscan
GO:0042073Biological Processintraciliary transportInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0045893Biological Processpositive regulation of DNA-templated transcriptionInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0043015Molecular Functiongamma-tubulin bindingInterproscan
GO:0000226Biological Processmicrotubule cytoskeleton organizationInterproscan
GO:0000278Biological Processmitotic cell cycleInterproscan
GO:0000922Cellular Componentspindle poleInterproscan
GO:0000923Cellular Componentequatorial microtubule organizing centerInterproscan
GO:0000930Cellular Componentgamma-tubulin complexInterproscan
GO:0005813Cellular ComponentcentrosomeInterproscan
GO:0005815Cellular Componentmicrotubule organizing centerInterproscan
GO:0007020Biological Processmicrotubule nucleationInterproscan
GO:0031122Biological Processcytoplasmic microtubule organizationInterproscan
GO:0051011Molecular Functionmicrotubule minus-end bindingInterproscan
GO:0051225Biological Processspindle assemblyInterproscan
GO:0051321Biological Processmeiotic cell cycleInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0016831Molecular Functioncarboxy-lyase activityInterproscan
GO:0016830Molecular Functioncarbon-carbon lyase activityInterproscan
GO:0019752Biological Processcarboxylic acid metabolic processInterproscan
GO:0030170Molecular Functionpyridoxal phosphate bindingInterproscan
GO:0004674Molecular Functionprotein serine/threonine kinase activityInterproscan
GO:0035556Biological Processintracellular signal transductionInterproscan
GO:0043065Biological Processpositive regulation of apoptotic processInterproscan
GO:0000184Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decayInterproscan
GO:0000339Molecular FunctionRNA cap bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005845Cellular Componentobsolete mRNA cap binding complexInterproscan
GO:0005846Cellular Componentnuclear cap binding complexInterproscan
GO:0006406Biological ProcessmRNA export from nucleusInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0016070Biological ProcessRNA metabolic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K20180VPS16; vacuolar protein sorting-associated protein 16-Transcription factorsko03000deepkoala
Pyrimidine metabolismko00240deepkoala
Membrane traffickingko04131deepkoala

TOP