Gene detail

Detailed information of g5.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: PZQ45287.1, ketol-acid reductoisomerase [Micavibrio aeruginosavorus]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B6ITR6	Ketol-acid reductoisomerase (NADP(+)) OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=ilvC PE=3 SV=1
B7KYZ3	Ketol-acid reductoisomerase (NADP(+)) OS=Methylorubrum extorquens (strain CM4 / NCIMB 13688) OX=440085 GN=ilvC PE=3 SV=1
A9VZF3	Ketol-acid reductoisomerase (NADP(+)) OS=Methylorubrum extorquens (strain PA1) OX=419610 GN=ilvC PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000086 (this species only)
Orthogroup (gene family)	OG0000129 (this species only)
Orthogroup (gene family)	OG0000171 (this species only)
Orthogroup (gene family)	OG0000338 (this species only)
Orthogroup (gene family)	OG0000356 (this species only)
Orthogroup (gene family)	OG0003274 (this species only)
Orthogroup (gene family)	OG0003657 (this species only)
Orthogroup (gene family)	OG0005457 (this species only)
Orthogroup (gene family)	OG0008730 (this species only)
Orthogroup (gene family)	OG0015286 (this species only)
Orthogroup (gene family)	OG0019774 (this species only)
Orthogroup (gene family)	OG0021355 (this species only)
Orthogroup (gene family)	OG0171150 (this species only)
Orthogroup (gene family)	OG0174032 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16178 all species →	Anoct_dimer	Dimerisation domain of Ca+-activated chloride-channel, anoctamin	Family	Interproscan
PF19745 all species →	FUT8_N_cat	Alpha-(1,6)-fucosyltransferase N- and catalytic domains	Domain	Interproscan
PF01450 all species →	IlvC	Acetohydroxy acid isomeroreductase, catalytic domain	Family	Interproscan
PF07991 all species →	IlvN	Acetohydroxy acid isomeroreductase, NADPH-binding domain	Family	Interproscan
PF18382 all species →	Formin_GBD_N	Formin N-terminal GTPase-binding domain	Domain	Interproscan
PF04427 all species →	Brix	Brix domain	Domain	Interproscan
PF06027 all species →	SLC35F	Solute carrier family 35	Family	Interproscan
PF17762 all species →	HTH_ParB	HTH domain found in ParB protein	Domain	Interproscan
PF01968 all species →	Hydantoinase_A	Hydantoinase/oxoprolinase	Family	Interproscan
PF02195 all species →	ParBc	ParB/Sulfiredoxin domain	Family	Interproscan
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan
PF02214 all species →	BTB_2	BTB/POZ domain	Domain	Interproscan
PF00067 all species →	p450	Cytochrome P450	Domain	Interproscan
PF02140 all species →	Gal_Lectin	Galactose binding lectin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007632 all species →	Family	Anoctamin	Interproscan
IPR032394 all species →	Domain	Anoctamin, dimerisation domain	Interproscan
IPR045573 all species →	Domain	Alpha-(1,6)-fucosyltransferase, N- and catalytic domain	Interproscan
IPR027350 all species →	Domain	Glycosyltransferase family 23 (GT23) domain	Interproscan
IPR014359 all species →	Family	Ketol-acid reductoisomerase, prokaryotic	Interproscan
IPR013023 all species →	Family	Ketol-acid reductoisomerase	Interproscan
IPR000506 all species →	Domain	Ketol-acid reductoisomerase, C-terminal	Interproscan
IPR013116 all species →	Domain	Ketol-acid reductoisomerase, N-terminal	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR008927 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR041387 all species →	Domain	FHOD1, N-terminal GTPase-binding domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR039770 all species →	Family	Ribosome biogenesis protein Rpf2	Interproscan
IPR007109 all species →	Domain	Brix domain	Interproscan
IPR009262 all species →	Family	Solute carrier family 35 member SLC35F1/F2/F6	Interproscan
IPR050336 all species →	Family	Chromosome-partitioning and nucleoid occlusion protein	Interproscan
IPR041468 all species →	Domain	ParB/Spo0J, HTH domain	Interproscan
IPR004437 all species →	Domain	ParB/RepB/Spo0J partition protein	Interproscan
IPR003115 all species →	Domain	ParB/Sulfiredoxin	Interproscan
IPR036086 all species →	Homologous_superfamily	ParB/Sulfiredoxin superfamily	Interproscan
IPR002821 all species →	Domain	Hydantoinase A/oxoprolinase	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR003968 all species →	Family	Potassium channel, voltage dependent, Kv	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR003131 all species →	Domain	Potassium channel tetramerisation-type BTB domain	Interproscan
IPR003972 all species →	Family	Potassium channel, voltage dependent, Kv1	Interproscan
IPR027359 all species →	Homologous_superfamily	Voltage-dependent channel domain superfamily	Interproscan
IPR001128 all species →	Family	Cytochrome P450	Interproscan
IPR036396 all species →	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR002401 all species →	Family	Cytochrome P450, E-class, group I	Interproscan
IPR050182 all species →	Family	Cytochrome P450 family 2	Interproscan
IPR017972 all species →	Conserved_site	Cytochrome P450, conserved site	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR043159 all species →	Homologous_superfamily	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR000922 all species →	Domain	D-galactoside/L-rhamnose binding SUEL lectin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12308 all species →	ANOCTAMIN	Interproscan
PTHR13132 all species →	ALPHA- 1,6 -FUCOSYLTRANSFERASE	Interproscan
PTHR21371 all species →	KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL	Interproscan
PTHR45920 all species →	FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I	Interproscan
PTHR34239 all species →	APPLE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR12728 all species →	BRIX DOMAIN CONTAINING PROTEIN	Interproscan
PTHR33375 all species →	CHROMOSOME-PARTITIONING PROTEIN PARB-RELATED	Interproscan
PTHR11537 all species →	VOLTAGE-GATED POTASSIUM CHANNEL	Interproscan
PTHR24300 all species →	CYTOCHROME P450 508A4-RELATED	Interproscan
PTHR46780 all species →	PROTEIN EVA-1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005254 all species →	Molecular Function	chloride channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:1902476 all species →	Biological Process	chloride transmembrane transport	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0006487 all species →	Biological Process	protein N-linked glycosylation	Interproscan
GO:0036071 all species →	Biological Process	N-glycan fucosylation	Interproscan
GO:0046921 all species →	Molecular Function	alpha-(1->6)-fucosyltransferase activity	Interproscan
GO:0004455 all species →	Molecular Function	ketol-acid reductoisomerase activity	Interproscan
GO:0009082 all species →	Biological Process	branched-chain amino acid biosynthetic process	Interproscan
GO:0050661 all species →	Molecular Function	NADP binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0009097 all species →	Biological Process	isoleucine biosynthetic process	Interproscan
GO:0009099 all species →	Biological Process	L-valine biosynthetic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0030866 all species →	Biological Process	cortical actin cytoskeleton organization	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0000463 all species →	Biological Process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000470 all species →	Biological Process	maturation of LSU-rRNA	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0007059 all species →	Biological Process	chromosome segregation	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0005249 all species →	Molecular Function	voltage-gated potassium channel activity	Interproscan
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan
GO:0008076 all species →	Cellular Component	voltage-gated potassium channel complex	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0051260 all species →	Biological Process	protein homooligomerization	Interproscan
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0006082 all species →	Biological Process	organic acid metabolic process	Interproscan
GO:0006805 all species →	Biological Process	xenobiotic metabolic process	Interproscan
GO:0016712 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00053	ilvC; ketol-acid reductoisomerase	EC:1.1.1.86	Pantothenate and CoA biosynthesis	ko00770	deepkoala
K00717	FUT8; glycoprotein 6-alpha-L-fucosyltransferase	EC:2.4.1.68	Glycosyltransferases	ko01003	deepkoala
K14847	RPF2; ribosome production factor 2	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.