Detailed information of g503.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MCL6495118.1, YifB family Mg chelatase-like AAA ATPase [Ignavibacterium sp.]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P45049Competence protein ComM OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=comM PE=1 SV=1
P57015Uncharacterized protein YifB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=yifB PE=3 SV=1
P22787Uncharacterized protein YifB OS=Escherichia coli (strain K12) OX=83333 GN=yifB PE=3 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04427BrixBrix domainDomainInterproscan
PF01432Peptidase_M3Peptidase family M3FamilyInterproscan
PF13271DUF4062Domain of unknown function (DUF4062)FamilyInterproscan
PF13177DNA_pol3_delta2DNA polymerase III, delta subunitDomainInterproscan
PF11838ERAP1_CERAP1-like C-terminal domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF13335Mg_chelatase_CMagnesium chelatase, subunit ChlI C-terminalFamilyInterproscan
PF01078Mg_chelataseMagnesium chelatase, subunit ChlIDomainInterproscan
PF13541ChlISubunit ChlI of Mg-chelataseDomainInterproscan
PF13683rve_3Integrase core domainDomainInterproscan
PF00413Peptidase_M10MatrixinDomainInterproscan
PF00629MAMMAM domain, meprin/A5/muDomainInterproscan
PF15478LKAAEARFamily of unknown function with LKAAEAR motifFamilyInterproscan
PF08640U3_assoc_6U3 small nucleolar RNA-associated protein 6FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR044281FamilyU3 snoRNP protein/Ribosome production factor 1Interproscan
IPR007109DomainBrix domainInterproscan
IPR001567DomainPeptidase M3A/M3B catalytic domainInterproscan
IPR045090FamilyPeptidase M3A/M3BInterproscan
IPR052752FamilyNACHT and WD repeat domain-containing proteinInterproscan
IPR025139DomainDomain of unknown function DUF4062Interproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR050238FamilyDNA Replication and Repair Clamp Loader ComplexInterproscan
IPR027268Homologous_superfamilyPeptidase M4/M1, CTD superfamilyInterproscan
IPR050344FamilyPeptidase M1 family aminopeptidasesInterproscan
IPR024571DomainERAP1-like C-terminal domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR001208DomainMCM domainInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR025158DomainMg chelatase-related protein, C-terminal domainInterproscan
IPR004482FamilyMg chelatase-related proteinInterproscan
IPR000523DomainMagnesium chelatase ChlI-like, catalytic domainInterproscan
IPR045006FamilyMagnesium-chelatase subunit ChlI-likeInterproscan
IPR014721Homologous_superfamilySmall ribosomal subunit protein uS5 domain 2-type fold, subgroupInterproscan
IPR020568Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR021190FamilyPeptidase M10AInterproscan
IPR001818DomainPeptidase M10, metallopeptidaseInterproscan
IPR021158Binding_sitePeptidase M10A, cysteine switch, zinc binding siteInterproscan
IPR036365Homologous_superfamilyPGBD-like superfamilyInterproscan
IPR024079Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR000998DomainMAM domainInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR051560FamilyMAM domain-containing proteinInterproscan
IPR029152FamilyProtein LKAAEAR1Interproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR013949FamilyU3 small nucleolar RNA-associated protein 6Interproscan
IPR003107RepeatHAT (Half-A-TPR) repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22734U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4Interproscan
PTHR11804PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATEDInterproscan
PTHR19871BETA TRANSDUCIN-RELATED PROTEINInterproscan
PTHR11669REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNITInterproscan
PTHR11533PROTEASE M1 ZINC METALLOPROTEASEInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR32039MAGNESIUM-CHELATASE SUBUNIT CHLIInterproscan
PTHR10201MATRIX METALLOPROTEINASEInterproscan
PTHR23282APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.Interproscan
PTHR35665PROTEIN LKAAEAR1Interproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR23271HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 66Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000460Biological Processmaturation of 5.8S rRNAInterproscan
GO:0000470Biological Processmaturation of LSU-rRNAInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0030687Cellular Componentpreribosome, large subunit precursorInterproscan
GO:0042134Molecular FunctionrRNA primary transcript bindingInterproscan
GO:0019843Molecular FunctionrRNA bindingInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0006518Biological Processpeptide metabolic processInterproscan
GO:0006261Biological ProcessDNA-templated DNA replicationInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0042277Molecular Functionpeptide bindingInterproscan
GO:0043171Biological Processpeptide catabolic processInterproscan
GO:0070006Molecular Functionmetalloaminopeptidase activityInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0032508Biological ProcessDNA duplex unwindingInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0030574Biological Processcollagen catabolic processInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000462Biological Processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0030515Molecular FunctionsnoRNA bindingInterproscan
GO:0032040Cellular Componentsmall-subunit processomeInterproscan
GO:0034388Cellular ComponentPwp2p-containing subcomplex of 90S preribosomeInterproscan
GO:0006396Biological ProcessRNA processingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01414prlC; oligopeptidase AEC:3.4.24.70
Protein processing-deepkoala
Ribosome biogenesisko03009deepkoala
Ribosome biogenesisko03009deepkoala
Peptidases and inhibitorsko01002deepkoala

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