Detailed information of g504.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MCG8334937.1, 4-hydroxy-tetrahydrodipicolinate synthase [Pseudomonadota bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q429484-hydroxy-tetrahydrodipicolinate synthase, chloroplastic OS=Nicotiana tabacum OX=4097 GN=DHPS1 PE=2 SV=1
P248474-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic OS=Triticum aestivum OX=4565 PE=1 SV=1
P262594-hydroxy-tetrahydrodipicolinate synthase, chloroplastic OS=Zea mays OX=4577 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00567TUDORTudor domainDomainInterproscan
PF00133tRNA-synt_1tRNA synthetases class I (I, L, M and V)DomainInterproscan
PF08264Anticodon_1Anticodon-binding domain of tRNA ligaseDomainInterproscan
PF19302DUF5915Domain of unknown function (DUF5915)DomainInterproscan
PF04442CtaG_Cox11Cytochrome c oxidase assembly protein CtaG/Cox11FamilyInterproscan
PF10613Lig_chan-Glu_bdLigated ion channel L-glutamate- and glycine-binding siteDomainInterproscan
PF00060Lig_chanLigand-gated ion channelFamilyInterproscan
PF08773CathepsinC_excCathepsin C exclusion domainDomainInterproscan
PF00112Peptidase_C1Papain family cysteine proteaseDomainInterproscan
PF00620RhoGAPRhoGAP domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF01400AstacinAstacin (Peptidase family M12A)DomainInterproscan
PF00701DHDPSDihydrodipicolinate synthetase familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR035437Homologous_superfamilySNase-like, OB-fold superfamilyInterproscan
IPR002999DomainTudor domainInterproscan
IPR002300DomainAminoacyl-tRNA synthetase, class IaInterproscan
IPR013155DomainMethionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-bindingInterproscan
IPR009080Homologous_superfamilyAminoacyl-tRNA synthetase, class Ia, anticodon-bindingInterproscan
IPR033709DomainIsoleucyl tRNA synthetase type 2, anticodon-binding domainInterproscan
IPR014729Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR023586FamilyIsoleucine-tRNA ligase, type 2Interproscan
IPR002301FamilyIsoleucine-tRNA ligaseInterproscan
IPR009008Homologous_superfamilyValyl/Leucyl/Isoleucyl-tRNA synthetase, editing domainInterproscan
IPR023471Homologous_superfamilyCytochrome c oxidase assembly protein CtaG/Cox11, domain superfamilyInterproscan
IPR007533FamilyCytochrome c oxidase assembly protein CtaG/Cox11Interproscan
IPR019594DomainIonotropic glutamate receptor, L-glutamate and glycine-binding domainInterproscan
IPR001320DomainIonotropic glutamate receptor, C-terminalInterproscan
IPR015683FamilyIonotropic glutamate receptorInterproscan
IPR001508FamilyIonotropic glutamate receptor, metazoaInterproscan
IPR014882DomainCathepsin C exclusionInterproscan
IPR000668DomainPeptidase C1A, papain C-terminalInterproscan
IPR025661Active_siteCysteine peptidase, asparagine active siteInterproscan
IPR036496Homologous_superfamilyCathepsin C, exclusion domain superfamilyInterproscan
IPR000169Active_siteCysteine peptidase, cysteine active siteInterproscan
IPR038765Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR013128FamilyPeptidase C1AInterproscan
IPR008936Homologous_superfamilyRho GTPase activation proteinInterproscan
IPR000198DomainRho GTPase-activating protein domainInterproscan
IPR052118FamilyRho GTPase-activating regulatorInterproscan
IPR005522FamilyInositol polyphosphate kinaseInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR006026DomainPeptidase, metallopeptidaseInterproscan
IPR001506DomainPeptidase M12AInterproscan
IPR034035DomainAstacin-like metallopeptidase domainInterproscan
IPR024079Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR020624Conserved_siteSchiff base-forming aldolase, conserved siteInterproscan
IPR020625Active_siteSchiff base-forming aldolase, active siteInterproscan
IPR002220FamilyDapA-likeInterproscan
IPR013785Homologous_superfamilyAldolase-type TIM barrelInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22655UNCHARACTERIZEDInterproscan
PTHR42780SOLEUCYL-TRNA SYNTHETASEInterproscan
PTHR21320CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX11-RELATEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR18966IONOTROPIC GLUTAMATE RECEPTORInterproscan
PTHR12411CYSTEINE PROTEASE FAMILY C1-RELATEDInterproscan
PTHR46150RHO GTPASE-ACTIVATING PROTEIN 100FInterproscan
PTHR12400INOSITOL POLYPHOSPHATE KINASEInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR10127DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAININGInterproscan
PTHR12128DIHYDRODIPICOLINATE SYNTHASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0042078Biological Processgerm-line stem cell divisionInterproscan
GO:0000166Molecular Functionnucleotide bindingInterproscan
GO:0004812Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006418Biological ProcesstRNA aminoacylation for protein translationInterproscan
GO:0000049Molecular FunctiontRNA bindingInterproscan
GO:0004822Molecular Functionisoleucine-tRNA ligase activityInterproscan
GO:0006428Biological Processisoleucyl-tRNA aminoacylationInterproscan
GO:0002161Molecular Functionaminoacyl-tRNA editing activityInterproscan
GO:0005507Molecular Functioncopper ion bindingInterproscan
GO:0031304Cellular Componentobsolete intrinsic component of mitochondrial inner membraneInterproscan
GO:0015276Molecular Functionligand-gated monoatomic ion channel activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0008066Molecular Functionglutamate receptor activityInterproscan
GO:0035249Biological Processsynaptic transmission, glutamatergicInterproscan
GO:0038023Molecular Functionsignaling receptor activityInterproscan
GO:0050804Biological Processmodulation of chemical synaptic transmissionInterproscan
GO:0098839Cellular Componentpostsynaptic density membraneInterproscan
GO:1904315Molecular Functiontransmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potentialInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0008234Molecular Functioncysteine-type peptidase activityInterproscan
GO:0004197Molecular Functioncysteine-type endopeptidase activityInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0005764Cellular ComponentlysosomeInterproscan
GO:0051603Biological Processproteolysis involved in protein catabolic processInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0005096Molecular FunctionGTPase activator activityInterproscan
GO:0016477Biological Processcell migrationInterproscan
GO:0046578Biological Processregulation of Ras protein signal transductionInterproscan
GO:0097060Cellular Componentsynaptic membraneInterproscan
GO:0000828Molecular Functioninositol hexakisphosphate kinase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0016301Molecular Functionkinase activityInterproscan
GO:0032958Biological Processinositol phosphate biosynthetic processInterproscan
GO:0046854Biological Processphosphatidylinositol phosphate biosynthetic processInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0016829Molecular Functionlyase activityInterproscan
GO:0008840Molecular Function4-hydroxy-tetrahydrodipicolinate synthase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K05313GRIN; glutamate receptor, ionotropic, invertebrate-Monobactam biosynthesisko00261deepkoala
Mitochondrial biogenesisko03029deepkoala
Exosomeko04147deepkoala
Ion channelsko04040deepkoala

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