Gene detail

Detailed information of g507.t1 in Montipora capitata

Genomic Location: Sc0000004:1355699...1368677
NR annotation: XP_029185997.2, fanconi-associated nuclease 1-like isoform X2 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g507.t1

atggaatccggaaaaaggaccaggttatctctttcccgtaagcgaaaaaatagagttgaagatgacttttcggattccattaacattccattgaaatcaaaacttacaagttcaattgtggaagaaaaccaagaacctgaagacaaagtcaacaacagctcttgtggagaaaatcatgaatcaacaatcgtaatttcaaggaaaccacattccagtaagacgaagagagatatagcagcatggttaacaaaaccgtgtaacccgagaactgtgccatgcccagtgtgtggtaaattggtgtttctttctagtattaacagacacttggatagcaattgtaaatccgatgaaaacagcaaaccacaaggtcatgggatcaatagattaccttgtagtaaccttaaaggaaatggactccttactagtttaagcactggtttaagtttccagggagttggcaaagagaagcatctggtgccagctgttttgggtaatgtgatggaatcaaaacaatgtaaacatggtaggagatttgctcaaagaaaggaagattgtagaagctttgttcccaagttgaaaagttcctccaattctgcagatgtttttcatgaagattcacccctggcaaaagtttcaagagaagataagcatggtgaccatagtgagaaacagttgaaaaatggttcatgtaagataattttggagggggattgccctgggtctttcaataactttgcacagggggattccacagttgcacaatcacctgctaaaacccagactgtggatgatcaagaatgtaaaattggagagaagggcatgcaaaaaaatccaaaacttcttgaaggaaaagatctatccagggattcaacaaactttgatgaaagtattcaagaacataatggcacgctggaagagaaaaatttggaaattaaagttggggaacggcaagattatgaaccatattacctggctaattttaagttagtcttgaataatgtgatgtcaaatgaagaagacagaaatttattcaatgaagaagacaatgagatcattgatttatttaatgaaatgtctccagaagagcagaagctttacattcgtctttttcagcgtaagcatgggtggttcaggtgctgtaagcttgactacccaaagatttgcaaagatctgaaaccagttacagattccctcattgaaaaaggttttctaagagatcagcatcaattgacaaacctccaggaagcactaaacctaatagttgcaccggagttgaagcttttggttaaatctcttcacatttcccctggaaagaaaggaggcactaaagaggaaataatagacacaatagtcaatcttgcacaaaatcagaaaacactttttgggagctttgaaagtgttgttttgaaaagagtcaggcaagtgcttgggtcttgtgtcagagtagctgatcttccaagagaggttttcaaccgagttttgttactctttacgatgaatgtgattccagatgaagaggattccactaacaatggacaggctcagcaactgtcaacactgtttcttgccaacattggcaaagttgtttacccaccatacttgattgacaggcccacaacggttttccattctcgtgagagcctcattgcatttgccaatgcttaccagcaaaagcacgagatgttcatggcacttgagagcaacaactttgagcaggctttcagctactttcctgaggcatcgaagcagttcaaagatatgcttgtcacattgaaagataatagttcagagttaacagcagttcgtcttccagaacacttgcgttccttctcagctgagtgggcaatcactaaaatgtgttattttggagtggaagtaatgcagaaatggcggcaatatgaagaggctgtgagtcagttagaagaactgttgaagcaagatgtgttttgttttgattcacgtggacgctggtatgacagactggccctcaatttgcatcaacacttaaaaagacctgaacaggccttagaggtgattaggcaaggtttgtctgatccacatgttcggtttgggcgtcatcttgcactggtacaacgagcaaaacgtattctttcttcacaagcatttaaaaaaggaagaaggaaagaaagtgaggaatttgaacatcttgatttgaaggaaccaagtccctgcaagtttatcaccatctctggaactcgttgtgctcagcttggtgtcttcattgcccccgaaatcagccaggatggtgttgtcaatcccgacactaaaaccttttgtgcagtcgaggaatacgcactgtcatattaccgacaacagggatttgaccaaggaatccatggagaggggtccacattttcctccctttattgcttgttcatgtgggatattatatttgcatgtggaattccagatgtgtttcgaagtcctttccaggcggcacctttagacatgtgctttgactcattttacaccaaccgcaaagaaatcatcgacagacgattggaggaaatcacgggagctacacttgagaaacttcaggaaatgctgttttcaaggtggacaagtaacgaagggcaggtctgcgctggcctcaactgggagcgatttagagatgtggagcaagccaaagtaatgcaaaatcttgttgtaatctattga

Transcript

g507.t1

ATGGAATCCGGAAAAAGGACCAGGTTATCTCTTTCCCGTAAGCGAAAAAATAGAGTTGAAGATGACTTTTCGGATTCCATTAACATTCCATTGAAATCAAAACTTACAAGTTCAATTGTGGAAGAAAACCAAGAACCTGAAGACAAAGTCAACAACAGCTCTTGTGGAGAAAATCATGAATCAACAATCGTAATTTCAAGGAAACCACATTCCAGTAAGACGAAGAGAGATATAGCAGCATGGTTAACAAAACCGTGTAACCCGAGAACTGTGCCATGCCCAGTGTGTGGTAAATTGGTGTTTCTTTCTAGTATTAACAGACACTTGGATAGCAATTGTAAATCCGATGAAAACAGCAAACCACAAGGTCATGGGATCAATAGATTACCTTGTAGTAACCTTAAAGGAAATGGACTCCTTACTAGTTTAAGCACTGGTTTAAGTTTCCAGGGAGTTGGCAAAGAGAAGCATCTGGTGCCAGCTGTTTTGGGTAATGTGATGGAATCAAAACAATGTAAACATGGTAGGAGATTTGCTCAAAGAAAGGAAGATTGTAGAAGCTTTGTTCCCAAGTTGAAAAGTTCCTCCAATTCTGCAGATGTTTTTCATGAAGATTCACCCCTGGCAAAAGTTTCAAGAGAAGATAAGCATGGTGACCATAGTGAGAAACAGTTGAAAAATGGTTCATGTAAGATAATTTTGGAGGGGGATTGCCCTGGGTCTTTCAATAACTTTGCACAGGGGGATTCCACAGTTGCACAATCACCTGCTAAAACCCAGACTGTGGATGATCAAGAATGTAAAATTGGAGAGAAGGGCATGcaaaaaaatccaaaacttcTTGAAGGAAAAGATCTATCCAGGGATTCAACAAACTTTGATGAAAGTATTCAAGAACATAATGGCACGCTGGAAGAGAAAAATTTGGAAATTAAAGTTGGGGAACGGCAAGATTATGAACCATATTACCTGGCTAATTTTAAGTTAGTCTTGAATAATGTGATGTCAAATGAAGAAGACAGAAATTTATTCAATGAAGAAGACAATGAGATCATTGATTTATTTAATGAAATGTCTCCAGAAGAGCAGAAGCTTTACATTCGTCTTTTTCAGCGTAAGCATGGGTGGTTCAGGTGCTGTAAGCTTGACTACCCAAAGATTTGCAAAGATCTGAAACCAGTTACAGATTCCCTCATTGAAAAAGGTTTTCTAAGAGATCAGCATCAATTGACAAACCTCCAGGAAGCACTAAACCTAATAGTTGCACCGGAGTTGAAGCTTTTGGTTAAATCTCTTCACATTTCCCCTGGAAAGAAAGGAGGCACTAAAGAGGAAATAATAGACACAATAGTCAATCTTGCACAAAATCAGAAAACACTTTTTGGGAGCTTTGAAAGTGTTGTTTTGAAAAGAGTCAGGCAAGTGCTTGGGTCTTGTGTCAGAGTAGCTGATCTTCCAAGAGAGGTTTTCAACCGAGTTTTGTTACTCTTTACGATGAATGTGATTCCAGATGAAGAGGATTCCACTAACAATGGACAGGCTCAGCAACTGTCAACACTGTTTCTTGCCAACATTGGCAAAGTTGTTTACCCACCATACTTGATTGACAGGCCCACAACGGTTTTCCATTCTCGTGAGAGCCTCATTGCATTTGCCAATGCTTACCAGCAAAAGCACGAGATGTTCATGGCACTTGAGAGCAACAACTTTGAGCAGGCTTTCAGCTACTTTCCTGAGGCATCGAAGCAGTTCAAAGATATGCTTGTCACATTGAAAGATAATAGTTCAGAGTTAACAGCAGTTCGTCTTCCAGAACACTTGCGTTCCTTCTCAGCTGAGTGGGCAATCActaaaatgtgttattttggAGTGGAAGTAATGCAGAAATGGCGGCAATATGAAGAGGCTGTGAGTCAGTTAGAAGAACTGTTGAAGCAAgatgtgttttgttttgattcACGTGGACGCTGGTATGACAGACTGGCCCTCAATTTGCATCAACACTTAAAAAGACCTGAACAGGCCTTAGAGGTGATTAGGCAAGGTTTGTCTGATCCACATGTTCGGTTTGGGCGTCATCTTGCACTGGTACAACGAGCAAAACGTATTCTTTCTTCACAAGCATTTAAAAAAGGAAGAAGGAAAGAAAGTGAGGAATTTGAACATCTTGATTTGAAGGAACCAAGTCCCTGCAAGTTTATCACCATCTCTGGAACTCGTTGTGCTCAGCTTGGTGTCTTCATTGCCCCCGAAATCAGCCAGGATGGTGTTGTCAATCCCGACACTAAAACCTTTTGTGCAGTCGAGGAATACGCACTGTCATATTACCGACAACAGGGATTTGACCAAGGAATCCATGGAGAGGGGTCCACATTTTCCTCCCTTTATTGCTTGTTCATGTGGGATATTATATTTGCATGTGGAATTCCAGATGTGTTTCGAAGTCCTTTCCAGGCGGCACCTTTAGACATGTGCTTTGACTCATTTTACACCAACCGCAAAGAAATCATCGACAGACGATTGGAGGAAATCACGGGAGCTACACTTGAGAAACTTCAGGAAATGCTGTTTTCAAGGTGGACAAGTAACGAAGGGCAGGTCTGCGCTGGCCTCAACTGGGAGCGATTTAGAGATGTGGAGCAAGCCAAAGTAATGCAAAATCTTGTTGTAATCTATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1LWH4	Fanconi-associated nuclease 1 OS=Danio rerio OX=7955 GN=fan1 PE=2 SV=2
Q69ZT1	Fanconi-associated nuclease 1 OS=Mus musculus OX=10090 GN=Fan1 PE=2 SV=2
D2HNY3	Fanconi-associated nuclease 1 OS=Ailuropoda melanoleuca OX=9646 GN=FAN1 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005089 (this species only)
Ubiquitin family	UBD\|ZnF\|UBZ · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21170 all species →	FAN1_TPR	Fanconi-associated nuclease 1, TPR domain	Domain	Interproscan
PF21315 all species →	FAN1_HTH	FAN1, HTH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006642 all species →	Domain	Rad18, zinc finger UBZ4-type	Interproscan
IPR049132 all species →	Family	Fanconi-associated nuclease 1-like, eukaryotes	Interproscan
IPR049126 all species →	Domain	Fanconi-associated nuclease 1-like, TPR domain	Interproscan
IPR033315 all species →	Family	Fanconi-associated nuclease 1-like	Interproscan
IPR049125 all species →	Domain	Fanconi-associated nuclease 1-like, winged-helix domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15749 all species →	FANCONI-ASSOCIATED NUCLEASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008409 all species →	Molecular Function	5'-3' exonuclease activity	Interproscan
GO:0017108 all species →	Molecular Function	5'-flap endonuclease activity	Interproscan
GO:0036297 all species →	Biological Process	interstrand cross-link repair	Interproscan
GO:0070336 all species →	Molecular Function	flap-structured DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g507.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.