Gene detail

Detailed information of g5070.t1.1 in Blastomussa wellsi

Genomic Location: not available for this species
NR annotation: XP_020615996.1, crossover junction endonuclease EME1-like [Orbicella faveolata]
Species abbreviation BWELL · all data for this species · gene families

Sequence

CDS

g5070.t1

atggcggacaaagCTGCAAATCAGAGTGTGACAGACAGTATGATCGACAGTGTTATGGCAGTCTGTCCAGAGGTAGATCACAAGGATGTTGCAAAGGATTTGGCCATCACAGGAAGTGCAACACGTACAATCAACAGAATTTTGGATGGGCAGTTTCCTGCGGTGGTTAATATTGACCATATTGATGCTGCAAGTGTTTCATTGGAAACCCAACACCATGGTCACATTAGAAAGTATTCTATGGATTCTGTAACATCCAAGAATTCAGAAATGTCTGTTAATAGGGCAACGTCATTGCAAAGTAACAATGATTCTAGTGGCACTGATCAGTATACTGACGtagatgacgatgacgatgtaATGATAGTacaagaagaaaggaaaagctTATTTAGCACTTTGAAGAACAGAATGAAGGTTAGAGGATCTGAGAAAAGCTACTcaaatcaaatttccaaggaTACACATTGTCACAAAGGggaagaaagcaaaacaattaTGACAAAGAACAAGCGGACAAGTGAAATTGTTGATCTCTCCTTCTCAGATGATGACAGTCAAGAAGATCTAAGCAGTTTGCTTTCACATTCCACCAAAACACAAAAACCAAACCAGAGTAACTGTGTTTTAGCTAAGGCAGAAAAGCCACAAACAAATAAGGCACAACCACCATGTAAGGACAAGTCTGCTGAAAAGGAGTGCTATGACAGAGAACTAAGACTTGTAGAATCATCTCCATTTCAACATGACACTAACAGTTGTGAGGATAGTGATGACCTTCCTTGTGTTTTACCATCTTCTTTATATTCAGGTAGCAAAAGGAGTAACCATTCTTTTAAGTCTTTTCCCAGTTCATGCACAGATAATTACAAAAGCAGTGACTCTAGAGTGCAAGGAAGCAATCTTGACTCTCAAGAGGAATCTGAAATCccagaaaagagaaagaaaaggcCAGCAGAGGAAATCATGAGGCAAAGGAATGAAGCTCTTCTGaaaaaacaagcaaaagaaCGTGAAAGGCAAGCCAAGAAGGAAGCTAAAGAGAAAGAGCAACAGGCCAGAGCTCAGGCtagtgaaaaaatgaaaatggctaAAGATAAGGAGAAACTGTTGAAAAAGGCAGAGAGCATGAATCAAAGAAATAATCGATTGGATGGCTGTATCAAGCAAGTAGTGGCCTGCATTGATCCTGAAATTCCAAGAAATGGTCAGCAACCAGAGGAAAGCGTTCTCATTCAAAAGTTGGAAACTTTGGGTGCGAGTAGCAAAATACAATCACAGCAGATTCCTGGCAGCATCACATGGCAGAGGTGTTGCCTAGAACATGATGTACAGGAAGAGACACTTGAGATCTCCACCAAGACCACTTTTACAGACGAACAACATGTAGTCCTTCGCTTGTCAGCGATCAAGTTTGTTGAAATGGTTTTTCGATTTCGTGAGGAGATGCAAAATCCCGCCATCTCAGTTATCGCTGATGAAGAAACCTTGACCACATTCTGCGGAAGAGCTCTTACAATTTACCCCGGAAAAGTTGTTACTATTGTAATTCTAGGTCTAGAGAAGTATTTCAGAGATGTAAAGCTCACTCAACAACGCCAGTTTCGAAGCGCAGTTCTCGGACCAAGCTCCTCGGACAGCGACAACCCCAGCGGTAAAGGACGGAAGAAGTCTAACAGGGAGTCTGGACCGAGTGTCATGGTATCGAGGGTTGACGTGGAAGAAGCTCTTGTGGACCTGCAGATCAAGCAACCAAAATGCCGAGTACGCATGTGTGAAACGGAAGAGGCGTTTTCTGAATTGATAGCCATGTTCACAAAAGCTGTCGCTGAGGCACCTTTCAAGAAGAAGCAACCAGAATCGTTTAGTTTCTGTGTCGAAGGAGGAGAGAAAGGATCTGTGAAGGTGTCAGAAGATGGAGAAGGTTTGAAAAAGGTCTGGCAGCAGCATTTCCAGCAGTTCAGAAATGTGTCAGCTGATATGGCGGCCGCCATAGTTTCTGTGTATCCTAGTCCACAGAGTCTTTTACAGGCGTACAAACGATGTAGTGGTACACAAGAAGCTTCGAAACTTCTTCAAGACATTCTGGTCCGGCGCGGCGCAGGGGTACTGGCCACCAGTCGGAGAATTGGACCCGAGCTTTCTCGCCGAATTCATCTTCTTCTTACAAGTGAAGATGGCGGCCAGGccatgaaatga

Transcript

g5070.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BJW7	Structure-specific endonuclease subunit EME1 OS=Mus musculus OX=10090 GN=Eme1 PE=1 SV=1
Q5NVA9	Structure-specific endonuclease subunit EME1 OS=Pongo abelii OX=9601 GN=EME1 PE=3 SV=1
Q96AY2	Structure-specific endonuclease subunit EME1 OS=Homo sapiens OX=9606 GN=EME1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004929 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21292 all species →	EME1-MUS81_C	EME1/MUS81, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042530 all species →	Homologous_superfamily	EME1/EME2, C-terminal domain	Interproscan
IPR003892 all species →	Domain	Ubiquitin system component CUE	Interproscan
IPR033310 all species →	Family	Mms4/EME1/EME2	Interproscan
IPR006166 all species →	Domain	ERCC4 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21077 all species →	EME1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0000712 all species →	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0008821 all species →	Molecular Function	crossover junction DNA endonuclease activity	Interproscan
GO:0031297 all species →	Biological Process	replication fork processing	Interproscan
GO:0031573 all species →	Biological Process	mitotic intra-S DNA damage checkpoint signaling	Interproscan
GO:0048476 all species →	Cellular Component	Holliday junction resolvase complex	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10882	EME1, MMS4; crossover junction endonuclease EME1	EC:3.1.22.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.