Gene detail

Detailed information of g5108.t1 in Montipora capitata

Genomic Location: Sc0000098:492298...513548
NR annotation: CAH3111198.1, unnamed protein product [Porites lobata]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g5108.t1

atgctggcaaaggagaagtgttgtgcggtttgcctgtcttgtggaaatacgttggagcaaaatgagcagccaataaaagccttgcgtggaaaatggcacccagcttgtttcaagtgttcagaatgtaaacgagttctgtcatctgtttactttgctcgcgacaacttactgttctgcagaaaggactacttcatgaaatttcgatcgacttgtcacgcttgtgaacgtatcataaccggcccagtaatggtagtggctgatcataaatttcacactgagtgtttttcctgttggtactgtcaacgatttctcggggaggaagacaactatgctattcttgagagacacagacttgtgtgttttctgtgcttaaaaaaggatttggaacaaccttggtggagttcttcactgcatgcagtctatcactttcatttgacagctttcaactgtgagagacacaagattgaagtagaagttgtgaagagtgcaagaggagtgcctttacaatctgcttgtactcagaaagaaccaaatcaagcaattattgtcattaaagggttcaacttgaaggagtttggttacaatatgccagtggtcagtcctggtgatgttgtactagaagtcaacagagttgttgtgtcacctaatagtattgatagagttgccactttattaacatctcggccagaggagattacacaaatcacagtagaacacaatgaaactggatttcaagcaaaatcaaactcaagaagaaaacacagttctgattctgatagtgaaccaaatgatgataagaacgtccgtaccagatcaatttccttattctcacggagacaccttgcacagcttgctccgtccttgtcagcagaaatttactctcacaatggtgaggtcacttttgatgtcaatggaaagaagatcactaagcctgctatgaggtcaaattcacttccccgcagagtgttcagaccatgtgatctggtgattggtgatgttatcggaaaagggttttttggacaagttagaaaggtgactcacagagagactggggaggttatggtattgaaggagatgttgcactatgacgaagatgcaagctcaggcttcttgaaggaggttgcattgcttaaaagcttaaatcacccaaatgtcctcagattcataggaatattgtacagagacaaagttctcaacttaattattgaatacatatctggagggacactacgccaaattttaaaggacaaggggaaagaattgtcatggttgcagagagttaagtttgccaaagatattgctgctggaatggcgtctggggagatgtcagtggttgtcgctgattttggattggctcgtgttgtcagggacagaccggcgtcacccaatcatcacttgacttcaagcctttggccatcttcagctggttcaaggccaccaacgtgccccggacaaaagccacctccaccgaaaaaacgatatacggtggttggaagtccgtattggatggctccagaaatgttgaacggtttgacttacaacgaacaagtcgatgtattttcctttggaattacaatgtgtgagatcattggccgagttaaagctgatccggactatatgcctcgcacaagtaaatttggcttagacgagaagaaattcaaagcagaattctgtgagagttgcccagagttgttctacaagatcgcattcctctgctgtgatcttgatcctgataagaggtaccaaaaagggcgcttatttgaaatggaagctaaagatgttataaagtggtcggtcatgggatttctgagtctgtttttcttctctggtctgtctttgattatttttgccgtcactatacccacaccgtttggagactatctaacgatgaaaggagctgctttccccatgaactaccgtctcagaatcgcacttcttattcttcttctaataataacagcctcgtccttctttgccataaccaaggaaaacaatcgacttttgacactgcttggtgtgttatttataatattattcctcgtcgagtttatcttggccatactatattttacaatggcaagtgaggtgaatttgaataaaaagaaatttagtaatggcatgcaaatgatgggagagtacggagtggacgagaaggtgactgaggcctttgatcgaatccagcggacctacgcgtgctgtggaatattggactaccgtgactggttcacttcaaagtgggcagcaagtcagggagtaaacaacagggtgccatcatcatgctgtaaattcccatcaccaacttgtggatacgacatggacacaaaaaatcccattgacgtcatcaacattctgggatgctcaggactcaacttctcttacgaagaccgaaaaaagtttgtgggaggagtgggtctggccattggcctcttaaatctgtttgcatcgttgtgttgcatcgtatttattttctgttttaattctgcgaggggactgagtccggtggatgctctcaaaggagtggaaccaagcgacgacccaggaaggcgagggtcatctgtgagggacacgccgcagcctaaacgacgaccccagccgaaatcggtcttgcgtacttccaaggaaaacctgactgaagacaatgtcgatgacgatgacgacttaccactcgacgccttcaaagatttacgcgataagtcacagatgtaa

Transcript

g5108.t1

ATGCTGGCAAAGGAGAAGTGTTGTGCGGTTTGCCTGTCTTGTGGAAATACGTTGGAGCAAAATGAGCAGCCAATAAAAGCCTTGCGTGGAAAATGGCACCCAGCTTGTTTCAAGTGTTCAGAATGTAAACGAGTTCTGTCATCTGTTTACTTTGCTCGCGACAACTTACTGTTCTGCAGAAAGGACTACTTCATGAAATTTCGATCGACTTGTCACGCTTGTGAACGTATCATAACCGGCCCAGTAATGGTAGTGGCTGATCATAAATTTCACACTGAGTGTTTTTCCTGTTGGTACTGTCAACGATTTCTCGGGGAGGAAGACAACTATGCTATTCTTGAGAGACACAGACTTGTGTGTTTTCTGTGCTTAAAAAAGGATTTGGAACAACCTTGGTGGAGTTCTTCACTGCATGCAGTCTATCACTTTCATTTGACAGCTTTCAACTGTGAGAGACACAAGATTGAAGTAGAAGTTGTGAAGAGTGCAAGAGGAGTGCCTTTACAATCTGCTTGTACTCAGAAAGAACCAAATCAAGCAATTATTGTCATTAAAGGGTTCAACTTGAAGGAGTTTGGTTACAATATGCCAGTGGTCAGTCCTGGTGATGTTGTACTAGAAGTCAACAGAGTTGTTGTGTCACCTAATAGTATTGATAGAGTTGCCACTTTATTAACATCTCGGCCAGAGGAGATTACACAAATCACAGTAGAACACAATGAAACTGGATTTCAAGCAAAATCAAACTCAAGAAGAAAACACAGTTCTGATTCTGATAGTGAACCAAATGATGATAAGAACGTCCGTACCAGATCAATTTCCTTATTCTCACGGAGACACCTTGCACAGCTTGCTCCGTCCTTGTCAGCAGAAATTTACTCTCACAATGGTGAGGTCACTTTTGATGTCAATGGAAAGAAGATCACTAAGCCTGCTATGAGGTCAAATTCACTTCCCCGCAGAGTGTTCAGACCATGTGATCTGGTGATTGGTGATGTTATCGGAAAAGGGTTTTTTGGACAAGTTAGAAAGGTGACTCACAGAGAGACTGGGGAGGTTATGGTATTGAAGGAGATGTTGCACTATGACGAAGATGCAAGCTCAGGCTTCTTGAAGGAGGTTGCATTGCTTAAAAGCTTAAATCACCCAAATGTCCTCAGATTCATAGGAATATTGTACAGAGACAAAGTTCTCAACTTAATTATTGAATACATATCTGGAGGGACACTACGCCAAATTTTAAAGGACAAGGGGAAAGAATTGTCATGGTTGCAGAGAGTTAAGTTTGCCAAAGATATTGCTGCTGGAATGGCGTCTGGGGAGATGTCAGTGGTTGTCGCTGATTTTGGATTGGCTCGTGTTGTCAGGGACAGACCGGCGTCACCCAATCATCACTTGACTTCAAGCCTTTGGCCATCTTCAGCTGGTTCAAGGCCACCAACGTGCCCCGGACAAAAGCCACCTCCACCGAAAAAACGATATACGGTGGTTGGAAGTCCGTATTGGATGGCTCCAGAAATGTTGAACGgttTGACTTACAACGAACAAGTCGATGTATTTTCCTTTGGAATTACAATGTGTGAGATCATTGGCCGAGTTAAAGCTGATCCGGACTATATGCCTCGCACAAGTAAATTTGGCTTAGACGAGAAGAAATTCAAAGCAGAATTCTGTGAGAGTTGCCCAGAGTTGTTCTACAAGATCGCATTCCTCTGCTGTGATCTTGATCCTGATAAGAGGTACCAAAAAGGGCGCTTATTTGAAATGGAAGCTAAAGATGTTATAAAGTGGTCGGTCATGGGATTTCTGAGTCTGTTTTTCTTCTCTGGTCTGTCTTTGATTATTTTTGCCGTCACTATACCCACACCGTTTGGAGACTATCTAACGATGAAAGGAGCTGCTTTCCCCATGAACTACCGTCTCAGAATCGCACTTCTTATTCTTCTTCTAATAATAACAGCCTCGTCCTTCTTTGCCATAACCAAGGAAAACAATCGACTTTTGACACTGCTTGGTGTgttatttataatattattcCTCGTCGAGTTTATCTTGGCCATACTATATTTTACAATGGCAAGTGAGGTGAATTTGAATAAAAAGAAATTTAGTAATGGCATGCAAATGATGGGAGAGTACGGAGTGGACGAGAAGGTGACTGAGGCCTTTGATCGAATCCAGCGGACCTACGCGTGCTGTGGAATATTGGACTACCGTGACTGGTTCACTTCAAAGTGGGCAGCAAGTCAGgGAGTAAACAACAGGGTGCCATCATCATGCTGTAAATTCCCATCACCAACTTGTGGATACGACATGGACACAAAAAATCCCATTGACGTCATCAACATTCTGGGATGCTCAGGACTCAACTTCTCTTACGAAGACCGAAAAAAGTTTGTGGGAGGAGTGGGTCTGGCCATTGGCCTCTTAAATCTGTTTGCATCGTTGTGTTGCATCGtatttattttctgttttaatTCTGCGAGGGGACTGAGTCCGGTGGATGCTCTCAAAGGAGTGGAACCAAGCGACGACCCAGGAAGGCGAGGGTCATCTGTGAGGGACACGCCGCAGCCTAAACGACGACCCCAGCCGAAATCGGTCTTGCGTACTTCCAAGGAAAACCTGACTGAAGACAATgtcgatgacgatgacgacttACCACTCGACGCCTTCAAAGATTTACGCGATAAGTCACAGATGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P53668	LIM domain kinase 1 OS=Mus musculus OX=10090 GN=Limk1 PE=1 SV=1
Q8QFP8	LIM domain kinase 1 OS=Gallus gallus OX=9031 GN=LIMK1 PE=1 SV=1
Q8IR79	LIM domain kinase 1 OS=Drosophila melanogaster OX=7227 GN=LIMK1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001855 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00412 all species →	LIM	LIM domain	Domain	Interproscan
PF00335 all species →	Tetraspanin	Tetraspanin family	Family	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001781 all species →	Domain	Zinc finger, LIM-type	Interproscan
IPR008952 all species →	Homologous_superfamily	Tetraspanin, EC2 domain superfamily	Interproscan
IPR018499 all species →	Family	Tetraspanin/Peripherin	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR050940 all species →	Family	Actin-regulating Serine/Threonine Kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46485 all species →	LIM DOMAIN KINASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05743	LIMK1; LIM domain kinase 1	EC:2.7.11.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.