Gene detail

Detailed information of g511.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: PCI30434.1, hypothetical protein COB67_01950 [SAR324 cluster bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P30847	Signal transduction histidine-protein kinase BaeS OS=Escherichia coli (strain K12) OX=83333 GN=baeS PE=1 SV=2
P35164	Sensor histidine kinase ResE OS=Bacillus subtilis (strain 168) OX=224308 GN=resE PE=1 SV=1
Q4L6C5	Signal transduction histidine-protein kinase ArlS OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=arlS PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001667 (this species only)
Orthogroup (gene family)	OG0002859 (this species only)
Orthogroup (gene family)	OG0005740 (this species only)
Orthogroup (gene family)	OG0017416 (this species only)
Orthogroup (gene family)	OG0021360 (this species only)
Orthogroup (gene family)	OG0021374 (this species only)
Orthogroup (gene family)	OG0029686 (this species only)
Orthogroup (gene family)	OG0032549 (this species only)
Orthogroup (gene family)	OG0041317 (this species only)
Orthogroup (gene family)	OG0048311 (this species only)
Orthogroup (gene family)	OG0059635 (this species only)
Orthogroup (gene family)	OG0171396 (this species only)
Orthogroup (gene family)	OG0172535 (this species only)
Orthogroup (gene family)	OG0173197 (this species only)
Orthogroup (gene family)	OG0174567 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13307 all species →	Helicase_C_2	Helicase C-terminal domain	Domain	Interproscan
PF06777 all species →	HBB	Helical and beta-bridge domain	Domain	Interproscan
PF06733 all species →	DEAD_2	DEAD_2	Family	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF13898 all species →	MINDY-3_4_CD	Deubiquitinating enzyme MINDY-3/4, conserved domain	Domain	Interproscan
PF13520 all species →	AA_permease_2	Amino acid permease	Family	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF02995 all species →	DUF229	Protein of unknown function (DUF229)	Family	Interproscan
PF02518 all species →	HATPase_c	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan
PF00512 all species →	HisKA	His Kinase A (phospho-acceptor) domain	Domain	Interproscan
PF07813 all species →	LTXXQ	LTXXQ motif family protein	Family	Interproscan
PF00672 all species →	HAMP	HAMP domain	Domain	Interproscan
PF02754 all species →	CCG	Cysteine-rich domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002464 all species →	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR013020 all species →	Family	ATP-dependent helicase Rad3/Chl1-like	Interproscan
IPR006555 all species →	Domain	ATP-dependent helicase, C-terminal	Interproscan
IPR010643 all species →	Domain	Helical and beta-bridge domain	Interproscan
IPR010614 all species →	Domain	RAD3-like helicase, DEAD	Interproscan
IPR045028 all species →	Family	Helicase superfamily 1/2, DinG/Rad3-like	Interproscan
IPR006554 all species →	Domain	Helicase-like, DEXD box c2 type	Interproscan
IPR014013 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR051362 all species →	Family	WD repeat creC family regulators	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR039785 all species →	Family	Deubiquitinating enzyme MINDY-3/4	Interproscan
IPR025257 all species →	Domain	Deubiquitinating enzyme MINDY-3/4, conserved domain	Interproscan
IPR050598 all species →	Family	Cellular Amino Acid Transporter	Interproscan
IPR002293 all species →	Family	Amino acid/polyamine transporter I	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR051714 all species →	Family	CCHC-type Zinc Finger Nucleic Acid Binding	Interproscan
IPR004245 all species →	Family	Protein of unknown function DUF229	Interproscan
IPR017850 all species →	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR004358 all species →	Domain	Signal transduction histidine kinase-related protein, C-terminal	Interproscan
IPR003594 all species →	Domain	Histidine kinase/HSP90-like ATPase	Interproscan
IPR003661 all species →	Domain	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	Interproscan
IPR012899 all species →	Family	LTXXQ motif family protein	Interproscan
IPR003660 all species →	Domain	HAMP domain	Interproscan
IPR036097 all species →	Homologous_superfamily	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR050398 all species →	Family	Bacterial Sensor Histidine Kinase	Interproscan
IPR005467 all species →	Domain	Histidine kinase domain	Interproscan
IPR051460 all species →	Family	Heterodisulfide reductase iron-sulfur subunit C	Interproscan
IPR004017 all species →	Domain	Cysteine-rich domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11472 all species →	DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER	Interproscan
PTHR14107 all species →	WD REPEAT PROTEIN	Interproscan
PTHR12473 all species →	UNCHARACTERIZED	Interproscan
PTHR11785 all species →	AMINO ACID TRANSPORTER	Interproscan
PTHR33244 all species →	INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR23002 all species →	ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN	Interproscan
PTHR10974 all species →	UNCHARACTERIZED	Interproscan
PTHR45528 all species →	SENSOR HISTIDINE KINASE CPXA	Interproscan
PTHR33332 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR43255 all species →	IRON-SULFUR-BINDING OXIDOREDUCTASE FADF-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0016818 all species →	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006366 all species →	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0045951 all species →	Biological Process	positive regulation of mitotic recombination	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0071108 all species →	Biological Process	protein K48-linked deubiquitination	Interproscan
GO:1990380 all species →	Molecular Function	K48-linked deubiquitinase activity	Interproscan
GO:0003333 all species →	Biological Process	amino acid transmembrane transport	Interproscan
GO:0015179 all species →	Molecular Function	L-amino acid transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003727 all species →	Molecular Function	single-stranded RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0045182 all species →	Molecular Function	translation regulator activity	Interproscan
GO:2000767 all species →	Biological Process	positive regulation of cytoplasmic translation	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0016310 all species →	Biological Process	phosphorylation	Interproscan
GO:0016772 all species →	Molecular Function	transferase activity, transferring phosphorus-containing groups	Interproscan
GO:0000155 all species →	Molecular Function	phosphorelay sensor kinase activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0042597 all species →	Cellular Component	periplasmic space	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08264	hdrD; heterodisulfide reductase subunit D	EC:1.8.98.1	Methane metabolism	ko00680	deepkoala
K09250	CNBP; cellular nucleic acid-binding protein	-	Transcription factors	ko03000	deepkoala
K10844	ERCC2, XPD; DNA excision repair protein ERCC-2	EC:5.6.2.3	DNA repair and recombination proteins	ko03400	deepkoala
K24741	WDR20; WD repeat-containing protein 20	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.