Detailed information of g511.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: PCI30434.1, hypothetical protein COB67_01950 [SAR324 cluster bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P30847Signal transduction histidine-protein kinase BaeS OS=Escherichia coli (strain K12) OX=83333 GN=baeS PE=1 SV=2
P35164Sensor histidine kinase ResE OS=Bacillus subtilis (strain 168) OX=224308 GN=resE PE=1 SV=1
Q4L6C5Signal transduction histidine-protein kinase ArlS OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=arlS PE=3 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13307Helicase_C_2Helicase C-terminal domainDomainInterproscan
PF06777HBBHelical and beta-bridge domainDomainInterproscan
PF06733DEAD_2DEAD_2FamilyInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF13898MINDY-3_4_CDDeubiquitinating enzyme MINDY-3/4, conserved domainDomainInterproscan
PF13520AA_permease_2Amino acid permeaseFamilyInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF02995DUF229Protein of unknown function (DUF229)FamilyInterproscan
PF02518HATPase_cHistidine kinase-, DNA gyrase B-, and HSP90-like ATPaseDomainInterproscan
PF00512HisKAHis Kinase A (phospho-acceptor) domainDomainInterproscan
PF07813LTXXQLTXXQ motif family proteinFamilyInterproscan
PF00672HAMPHAMP domainDomainInterproscan
PF02754CCGCysteine-rich domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002464Conserved_siteDNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR013020FamilyATP-dependent helicase Rad3/Chl1-likeInterproscan
IPR006555DomainATP-dependent helicase, C-terminalInterproscan
IPR010643DomainHelical and beta-bridge domainInterproscan
IPR010614DomainRAD3-like helicase, DEADInterproscan
IPR045028FamilyHelicase superfamily 1/2, DinG/Rad3-likeInterproscan
IPR006554DomainHelicase-like, DEXD box c2 typeInterproscan
IPR014013DomainHelicase superfamily 1/2, ATP-binding domain, DinG/Rad3-typeInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR051362FamilyWD repeat creC family regulatorsInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR039785FamilyDeubiquitinating enzyme MINDY-3/4Interproscan
IPR025257DomainDeubiquitinating enzyme MINDY-3/4, conserved domainInterproscan
IPR050598FamilyCellular Amino Acid TransporterInterproscan
IPR002293FamilyAmino acid/polyamine transporter IInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR051714FamilyCCHC-type Zinc Finger Nucleic Acid BindingInterproscan
IPR004245FamilyProtein of unknown function DUF229Interproscan
IPR017850Homologous_superfamilyAlkaline-phosphatase-like, core domain superfamilyInterproscan
IPR004358DomainSignal transduction histidine kinase-related protein, C-terminalInterproscan
IPR003594DomainHistidine kinase/HSP90-like ATPaseInterproscan
IPR003661DomainSignal transduction histidine kinase, dimerisation/phosphoacceptor domainInterproscan
IPR012899FamilyLTXXQ motif family proteinInterproscan
IPR003660DomainHAMP domainInterproscan
IPR036097Homologous_superfamilySignal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamilyInterproscan
IPR036890Homologous_superfamilyHistidine kinase/HSP90-like ATPase superfamilyInterproscan
IPR050398FamilyBacterial Sensor Histidine KinaseInterproscan
IPR005467DomainHistidine kinase domainInterproscan
IPR051460FamilyHeterodisulfide reductase iron-sulfur subunit CInterproscan
IPR004017DomainCysteine-rich domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11472DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBERInterproscan
PTHR14107WD REPEAT PROTEINInterproscan
PTHR12473UNCHARACTERIZEDInterproscan
PTHR11785AMINO ACID TRANSPORTERInterproscan
PTHR33244INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR23002ZINC FINGER CCHC DOMAIN CONTAINING PROTEINInterproscan
PTHR10974UNCHARACTERIZEDInterproscan
PTHR45528SENSOR HISTIDINE KINASE CPXAInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR43255IRON-SULFUR-BINDING OXIDOREDUCTASE FADF-RELATED-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003678Molecular FunctionDNA helicase activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0004386Molecular Functionhelicase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006139Biological Processnucleobase-containing compound metabolic processInterproscan
GO:0016818Molecular Functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydridesInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003684Molecular Functiondamaged DNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006366Biological Processtranscription by RNA polymerase IIInterproscan
GO:0045951Biological Processpositive regulation of mitotic recombinationInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004843Molecular Functioncysteine-type deubiquitinase activityInterproscan
GO:0071108Biological Processprotein K48-linked deubiquitinationInterproscan
GO:1990380Molecular FunctionK48-linked deubiquitinase activityInterproscan
GO:0003333Biological Processamino acid transmembrane transportInterproscan
GO:0015179Molecular FunctionL-amino acid transmembrane transporter activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0003727Molecular Functionsingle-stranded RNA bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0045182Molecular Functiontranslation regulator activityInterproscan
GO:2000767Biological Processpositive regulation of cytoplasmic translationInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0016310Biological ProcessphosphorylationInterproscan
GO:0016772Molecular Functiontransferase activity, transferring phosphorus-containing groupsInterproscan
GO:0000155Molecular Functionphosphorelay sensor kinase activityInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0042597Cellular Componentperiplasmic spaceInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0016021Cellular ComponentmembraneInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K08264hdrD; heterodisulfide reductase subunit DEC:1.8.98.1
DNA repair and recombination proteinsko03400deepkoala
Transcription factorsko03000deepkoala
Domain-containing proteins not elsewhere classifiedko04990deepkoala
Methane metabolismko00680deepkoala

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