Genomic Location: scaffold_2:11066708...11082488
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families
| CDS |
| g5135.t1 |
| Transcript |
| g5135.t1 |
| Protein |
| g5135.t1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003315 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14633 all species → | SH2_2 | SH2 domain | Domain | Interproscan |
| PF14639 all species → | YqgF | Holliday-junction resolvase-like of SPT6 | Domain | Interproscan |
| PF17674 all species → | HHH_9 | HHH domain | Domain | Interproscan |
| PF00575 all species → | S1 | S1 RNA binding domain | Domain | Interproscan |
| PF14635 all species → | HHH_7 | Helix-hairpin-helix motif | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036860 all species → | Homologous_superfamily | SH2 domain superfamily | Interproscan |
| IPR010994 all species → | Homologous_superfamily | RuvA domain 2-like | Interproscan |
| IPR035420 all species → | Domain | Spt6, SH2 domain | Interproscan |
| IPR035018 all species → | Domain | Spt6, SH2 domain, C terminus | Interproscan |
| IPR037027 all species → | Homologous_superfamily | YqgF/RNase H-like domain superfamily | Interproscan |
| IPR035019 all species → | Domain | Spt6, SH2 domain, N terminus | Interproscan |
| IPR017072 all species → | Family | Transcription elongation factor Spt6 | Interproscan |
| IPR028231 all species → | Domain | Transcription elongation factor Spt6, YqgF domain | Interproscan |
| IPR012337 all species → | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR042066 all species → | Homologous_superfamily | Spt6, Death-like domain | Interproscan |
| IPR041692 all species → | Domain | HHH domain 9 | Interproscan |
| IPR003029 all species → | Domain | S1 domain | Interproscan |
| IPR032706 all species → | Domain | Transcription elongation factor Spt6, helix-hairpin-helix motif | Interproscan |
| IPR000980 all species → | Domain | SH2 domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10145 all species → | TRANSCRIPTION ELONGATION FACTOR SPT6 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006139 all species → | Biological Process | nucleobase-containing compound metabolic process | Interproscan |
| GO:0006368 all species → | Biological Process | transcription elongation by RNA polymerase II | Interproscan |
| GO:0008023 all species → | Cellular Component | transcription elongation factor complex | Interproscan |
| GO:0031491 all species → | Molecular Function | nucleosome binding | Interproscan |
| GO:0034728 all species → | Biological Process | nucleosome organization | Interproscan |
| GO:0042393 all species → | Molecular Function | histone binding | Interproscan |
| GO:0140673 all species → | Biological Process | transcription elongation-coupled chromatin remodeling | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
g5135.t1.
