Gene detail

Detailed information of g5142.t1 in Acropora digitifera

Genomic Location: chr2Alt:38154182...38169653
NR annotation: XP_015765181.1, PREDICTED: mucin-like protein [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g5142.t1

ATGAAAGCAGCAGCAGCCCTGACTGCAGTGTTATACCAACCTGTCATAACGTTTCCAACTGCACTGGAAAAGGGATATGCGTTGATTTTGATATTTGCAAGTGTAAACAAGGTTGGAATGGAACTAACTGCACGGAGTACTCATGTGAACACTTTGATTATTGTTCAGGTCATGGACGCTGTGTGGCGTATGAAGTTTGTTCCTGTGACTATGGATGGACTGGGGCAAGTTGTGCCCTTCCAAACTGTGAAAATGTCAATCATTGCTCTGGCAAAGGAGAGTGTGTGGCCATCGACAATTGTCGTTGTTACCCAGGATACATTGGGACAAACTGCAGCCCTGACTGCAGTGTTATACCAACCTGTCATAACGTTTCCAACTGCACTGGAAAAGGGATATGCGTTGATTTTGATATTTGCAAGTGTAAACAAGGTTGGAATGGAACTAACTGCACGGAGTACTCATGTGAACACTTTGATTATTGTTCAGGTCATGGACGCTGTGTGGCGTATGAAGTTTGTTCCTGTGACTATGGATGGACTGGGGCAAGTTGTGCCCTTCCAAACTGTGAAAATGTCAATCATTGCTCTGGCAAAGGAGAGTGTGTGGCCATCGACAATTGTCGTTGTTACCCAGGATACATTGGGACAAACTGCAGTGAGTTGGCTGATTGTAACGAGCTTGCGAATTGCAGTAAACAAGGTGTCTGCGTTTCTCCTGATTCATTCAACGTATCGTGCAGGTCATGGACGCTGTGTGGCGTATGAAGTTTGTTCCTGTGACTATGGATGGACTGGGGCAAGTTGTGCCCTTCCAAACTGTGAAAATGTCAATCATTGCTCTGGCAAAGGAGAGTGTGTGGCCATCGACAATTGTCGTTGTTACCCAGGATACATTGGGACAAACTGCAGTGAGTTGGCTGATTGTAACGAGCTTGCGAATTGCAGTAAACAAGGTGTCTGCGTTTCTCCTGATTCATTCAACGTATCGTGCAGTTGTTATGGTGGTTTCACTGGTCCTAATTGCAGTCATCCCACATGCGCATCACTGAAGAACTGCTCTGGCCATGGCGTGTGCATTGAAGCCGAATTGTGTAAATGTGACTTTGGGTACAACGGTACTGACTGTAGCAGCTTCTCATGTGACGCACTTAATTCGTGCTCTGGGCATGGAAAGTGTGTTGGGTATGATGCCTGCAACTGCAGCTCTTCATGGTCAGGACCAGCATGCAGCATCCCGGATTGCAGTGGGGTAAATGACTGTTCTGGTCAGGGTGATTGTATTCTCGTCGATAAGTGTGCCTGTTACCCTTCCTTTGATGGGAAAGCTTGTGACCAGAAAGCGAAACCAAATATCCACAAACCTATCTTTGAGCAGACATTTTACGATACCACACTCACGGAAAACGCCCCCATTGGAACACTGATTTTCCAAGTTCGTGCAAATGACACTGATTTGGGAAGGAATGGAGAGTTGTTTTATTCAGCAATGGGCGAAAAAGATGTCGTAAAACTCATTGCTGTTGACGGAGCAACCGGAAAGGTTTACAGCTCTTTCACGTTTGATTTCGAAACCGTGGAAACCCCGGCATTCAATGTGACCATTGTAGCGTCGGATAACGGCTTTCCACAGAAATCTGGGGTAACCATCGCGCAGATAACAATCGTGGACGATAATGACAACTGCCCGTTATTCACCAAACCGTCAGATAATTTACAGGTTGAGATTGCTGACGCAAAACTAGGAGACGTTGTCATCAAGGTCTTGGCCACAGATTCAGACAGTGGAGTAAACGGCGATATAACATATTCCATATCTAACAATAATGCCTTCTCCATTGATCCGAAAACTGGTTTACTTACTATTGCGTCTAACTTGACCGAAAAAGAGTACCAGTTGACGGTCGGTGCATCTGACAACGGAAAAATTTCCTGCTTGACGGAGATACGCTTAAATGTCAAGGTGGTCAGTTTGCCAACGAAAGAACCTTCGAAGAAATCCCACAGTTCTGCAACAGACAATACACCGACTCCCTTTGATACGTCCAGTACAACAAAGACGCCAGAGCCTTGGACGTCTTCAGGCACTGAAAACACCCAGAAAAGTGCTACAACTGACATTTCATCGCCATTGACATCAGAAAACGATGCCACTGCAGCGCCACAGACAAGCCAGAAATATGTTGTCATTGGTGCTTCTGCCGGCGGAGGACTACTGGTGCTAATCATAGTAGCATTCGTAACAAAGAAGATTTTTTGTAAAGCCATGACCTCCCCACAAAGTAACATGAGTGAACAAGGCGCCAAAGTAAATCAAAGCTTTCAGGGCCGTCCAGGCATCTTGCAACCTTAG

Transcript

chr2Alt.g5142.t1

AAATGCAACACGAAATGTCATTACTAAACGTAGCCATAGCACACAATTCCACGAAAAGTGAAGAAATGGCAGAGTACAGTGCAGAAGATGAAAGCAGCAGCAGCCCTGACTGCAGTGTTATACCAACCTGTCATAACGTTTCCAACTGCACTGGAAAAGGGATATGCGTTGATTTTGATATTTGCAAGTGTAAACAAGGTTGGAATGGAACTAACTGCACGGAGTACTCATGTGAACACTTTGATTATTGTTCAGGTCATGGACGCTGTGTGGCGTATGAAGTTTGTTCCTGTGACTATGGATGGACTGGGGCAAGTTGTGCCCTTCCAAACTGTGAAAATGTCAATCATTGCTCTGGCAAAGGAGAGTGTGTGGCCATCGACAATTGTCGTTGTTACCCAGGATACATTGGGACAAACTGCAGCCCTGACTGCAGTGTTATACCAACCTGTCATAACGTTTCCAACTGCACTGGAAAAGGGATATGCGTTGATTTTGATATTTGCAAGTGTAAACAAGGTTGGAATGGAACTAACTGCACGGAGTACTCATGTGAACACTTTGATTATTGTTCAGGTCATGGACGCTGTGTGGCGTATGAAGTTTGTTCCTGTGACTATGGATGGACTGGGGCAAGTTGTGCCCTTCCAAACTGTGAAAATGTCAATCATTGCTCTGGCAAAGGAGAGTGTGTGGCCATCGACAATTGTCGTTGTTACCCAGGATACATTGGGACAAACTGCAGTGAGTTGGCTGATTGTAACGAGCTTGCGAATTGCAGTAAACAAGGTGTCTGCGTTTCTCCTGATTCATTCAACGTATCGTGCAGGTCATGGACGCTGTGTGGCGTATGAAGTTTGTTCCTGTGACTATGGATGGACTGGGGCAAGTTGTGCCCTTCCAAACTGTGAAAATGTCAATCATTGCTCTGGCAAAGGAGAGTGTGTGGCCATCGACAATTGTCGTTGTTACCCAGGATACATTGGGACAAACTGCAGTGAGTTGGCTGATTGTAACGAGCTTGCGAATTGCAGTAAACAAGGTGTCTGCGTTTCTCCTGATTCATTCAACGTATCGTGCAGTTGTTATGGTGGTTTCACTGGTCCTAATTGCAGTCATCCCACATGCGCATCACTGAAGAACTGCTCTGGCCATGGCGTGTGCATTGAAGCCGAATTGTGTAAATGTGACTTTGGGTACAACGGTACTGACTGTAGCAGCTTCTCATGTGACGCACTTAATTCGTGCTCTGGGCATGGAAAGTGTGTTGGGTATGATGCCTGCAACTGCAGCTCTTCATGGTCAGGACCAGCATGCAGCATCCCGGATTGCAGTGGGGTAAATGACTGTTCTGGTCAGGGTGATTGTATTCTCGTCGATAAGTGTGCCTGTTACCCTTCCTTTGATGGGAAAGCTTGTGACCAGAAAGCGAAACCAAATATCCACAAACCTATCTTTGAGCAGACATTTTACGATACCACACTCACGGAAAACGCCCCCATTGGAACACTGATTTTCCAAGTTCGTGCAAATGACACTGATTTGGGAAGGAATGGAGAGTTGTTTTATTCAGCAATGGGCGAAAAAGATGTCGTAAAACTCATTGCTGTTGACGGAGCAACCGGAAAGGTTTACAGCTCTTTCACGTTTGATTTCGAAACCGTGGAAACCCCGGCATTCAATGTGACCATTGTAGCGTCGGATAACGGCTTTCCACAGAAATCTGGGGTAACCATCGCGCAGATAACAATCGTGGACGATAATGACAACTGCCCGTTATTCACCAAACCGTCAGATAATTTACAGGTTGAGATTGCTGACGCAAAACTAGGAGACGTTGTCATCAAGGTCTTGGCCACAGATTCAGACAGTGGAGTAAACGGCGATATAACATATTCCATATCTAACAATAATGCCTTCTCCATTGATCCGAAAACTGGTTTACTTACTATTGCGTCTAACTTGACCGAAAAAGAGTACCAGTTGACGGTCGGTGCATCTGACAACGGAAAAATTTCCTGCTTGACGGAGATACGCTTAAATGTCAAGGTGGTCAGTTTGCCAACGAAAGAACCTTCGAAGAAATCCCACAGTTCTGCAACAGACAATACACCGACTCCCTTTGATACGTCCAGTACAACAAAGACGCCAGAGCCTTGGACGTCTTCAGGCACTGAAAACACCCAGAAAAGTGCTACAACTGACATTTCATCGCCATTGACATCAGAAAACGATGCCACTGCAGCGCCACAGACAAGCCAGAAATATGTTGTCATTGGTGCTTCTGCCGGCGGAGGACTACTGGTGCTAATCATAGTAGCATTCGTAACAAAGAAGATTTTTTGTAAAGCCATGACCTCCCCACAAAGTAACATGAGTGAACAAGGCGCCAAAGTAAATCAAAGCTTTCAGGGCCGTCCAGGCATCTTGCAACCTTAGCAGATTCAAAATAAAAAATCTTAAGACAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G5EDK5	Cadherin EGF LAG seven-pass G-type receptor fmi-1 OS=Caenorhabditis elegans OX=6239 GN=fmi-1 PE=1 SV=1
Q6V0I7	Protocadherin Fat 4 OS=Homo sapiens OX=9606 GN=FAT4 PE=1 SV=2
Q9NYQ6	Cadherin EGF LAG seven-pass G-type receptor 1 OS=Homo sapiens OX=9606 GN=CELSR1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028 all species →	Cadherin	Cadherin domain	Domain	Interproscan
PF07974 all species →	EGF_2	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR002126 all species →	Domain	Cadherin-like	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR013111 all species →	Domain	EGF-like domain, extracellular	Interproscan
IPR020894 all species →	Conserved_site	Cadherin conserved site	Interproscan
IPR050174 all species →	Family	Protocadherin/Cadherin-related Cell Adhesion	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24028 all species →	CADHERIN-87A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g5142.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.