Gene detail

Detailed information of g515.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MBU2647162.1, SPOR domain-containing protein [bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3ZCF3	S-phase kinase-associated protein 1 OS=Bos taurus OX=9913 GN=SKP1 PE=1 SV=1
P63209	S-phase kinase-associated protein 1 OS=Cavia porcellus OX=10141 GN=SKP1 PE=2 SV=2
Q5ZKF5	S-phase kinase-associated protein 1 OS=Gallus gallus OX=9031 GN=SKP1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000431 (this species only)
Orthogroup (gene family)	OG0000449 (this species only)
Orthogroup (gene family)	OG0000579 (this species only)
Orthogroup (gene family)	OG0001500 (this species only)
Orthogroup (gene family)	OG0004214 (this species only)
Orthogroup (gene family)	OG0007858 (this species only)
Orthogroup (gene family)	OG0009396 (this species only)
Orthogroup (gene family)	OG0011131 (this species only)
Orthogroup (gene family)	OG0017065 (this species only)
Orthogroup (gene family)	OG0017614 (this species only)
Orthogroup (gene family)	OG0170829 (this species only)
Orthogroup (gene family)	OG0171220 (this species only)
Orthogroup (gene family)	OG0172460 (this species only)
Orthogroup (gene family)	OG0173868 (this species only)
Orthogroup (gene family)	OG0174181 (this species only)
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01466 all species →	Skp1	Skp1 family, dimerisation domain	Domain	Interproscan
PF03931 all species →	Skp1_POZ	Skp1 family, tetramerisation domain	Domain	Interproscan
PF01549 all species →	ShK	ShK domain-like	Domain	Interproscan
PF04191 all species →	PEMT	Phospholipid methyltransferase	Family	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF02931 all species →	Neur_chan_LBD	Neurotransmitter-gated ion-channel ligand binding domain	Family	Interproscan
PF02932 all species →	Neur_chan_memb	Neurotransmitter-gated ion-channel transmembrane region	Family	Interproscan
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR052035 all species →	Family	Zinc finger BED domain-containing	Interproscan
IPR001232 all species →	Family	S-phase kinase-associated protein 1-like	Interproscan
IPR036296 all species →	Homologous_superfamily	SKP1-like, dimerisation domain superfamily	Interproscan
IPR016072 all species →	Domain	SKP1 component, dimerisation	Interproscan
IPR016073 all species →	Domain	SKP1 component, POZ domain	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR016897 all species →	Family	S-phase kinase-associated protein 1	Interproscan
IPR007730 all species →	Domain	Sporulation-like domain	Interproscan
IPR003582 all species →	Domain	ShKT domain	Interproscan
IPR024960 all species →	Family	Phosphatidyl-N-methylethanolamine/Phosphatidylethanolamine N-methyltransferase	Interproscan
IPR007318 all species →	Family	Phospholipid methyltransferase	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR051022 all species →	Family	Notch Signaling and Cell Fate Determination	Interproscan
IPR036719 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Interproscan
IPR006202 all species →	Domain	Neurotransmitter-gated ion-channel ligand-binding domain	Interproscan
IPR036734 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Interproscan
IPR006201 all species →	Family	Neurotransmitter-gated ion-channel	Interproscan
IPR018000 all species →	Conserved_site	Neurotransmitter-gated ion-channel, conserved site	Interproscan
IPR038050 all species →	Homologous_superfamily	Neuronal acetylcholine receptor	Interproscan
IPR006029 all species →	Domain	Neurotransmitter-gated ion-channel transmembrane domain	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR040352 all species →	Family	Transmembrane and ubiquitin-like domain-containing protein 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46481 all species →	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan
PTHR11165 all species →	SKP1	Interproscan
PTHR15458 all species →	PHOSPHATIDYLETHANOLAMINE N-METHYLTRANSFERASE	Interproscan
PTHR48013 all species →	DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED	Interproscan
PTHR24049 all species →	CRUMBS FAMILY MEMBER	Interproscan
PTHR18945 all species →	NEUROTRANSMITTER GATED ION CHANNEL	Interproscan
PTHR14557 all species →	PROTEIN C7ORF21	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0097602 all species →	Molecular Function	cullin family protein binding	Interproscan
GO:0042834 all species →	Molecular Function	peptidoglycan binding	Interproscan
GO:0006656 all species →	Biological Process	phosphatidylcholine biosynthetic process	Interproscan
GO:0008757 all species →	Molecular Function	S-adenosylmethionine-dependent methyltransferase activity	Interproscan
GO:0000165 all species →	Biological Process	MAPK cascade	Interproscan
GO:0004708 all species →	Molecular Function	MAP kinase kinase activity	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007157 all species →	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0032991 all species →	Cellular Component	protein-containing complex	Interproscan
GO:0045197 all species →	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005230 all species →	Molecular Function	extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0034220 all species →	Biological Process	monoatomic ion transmembrane transport	Interproscan
GO:0005231 all species →	Molecular Function	excitatory extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0007268 all species →	Biological Process	chemical synaptic transmission	Interproscan
GO:0030594 all species →	Molecular Function	neurotransmitter receptor activity	Interproscan
GO:0042391 all species →	Biological Process	regulation of membrane potential	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:0050877 all species →	Biological Process	nervous system process	Interproscan
GO:1904315 all species →	Molecular Function	transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0036503 all species →	Biological Process	ERAD pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00551	PEMT; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase	EC:2.1.1.17 EC:2.1.1.71	Glycerophospholipid metabolism	ko00564	deepkoala
K03094	SKP1, CBF3D; S-phase kinase-associated protein 1	-	Chromosome and associated proteins	ko03036	deepkoala
K05312	CHRNN; nicotinic acetylcholine receptor, invertebrate	-	Ion channels	ko04040	deepkoala
K23340	TMUB; transmembrane and ubiquitin-like domain-containing protein	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.