Gene detail

Detailed information of g5167.t1 in Acropora digitifera

Genomic Location: chr2Alt:38460893...38474832
NR annotation: XP_015765205.1, PREDICTED: collagen type IV alpha-3-binding protein-like [Acropora digitifera]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr2Alt.g5167.t1

ATTGAAATATGAAATGAAGTCGTCTTAGTTTTCTTTCGTTTTATTTGCTGTTAGACTTAAAATTCACAGAGAACCTTCTGATGATGTCTGGTGAACACACGCCGAGTCTGAGCGATGAAGAAGACGACGATTTAGATTGCAACAATCCTGCGCCTCAACTCCCTGAGCTTCAAGATACGCTGTCAAAATGGACAAACTACCTCCATGGATGGCAAGAAAGATGGGTAGTGCTAAGTGGCGGTGCTTTGTCGTATTACAAGTCAGAGTACGATACAGCCTTTGGATGTCGAGGATCGATGAGTGTGGCAAAAGCGAACATTCAGCGTCATGAGTTTGATGAGTGTAGATTTGATGTCAGTGTGAATGATTGTATGTATTACCTGAGGGCACCTAATGCAGAGACACGGGAAAAATGGGTGGATGGGCTTAAAGCTGTCAAGGCAGCAGAGTCTGGCTATGGCTCAGAATCAAGTCTCAAGAAAAATGGCTCTTTGCTGTCCTTGTCATCTGTAACAAGTTTATCAACAACAGCATCTTCCTCGTCTTTCAAGAAGGGTAGAAGTTTGCGTGAAAAGCTGATGGAGCTTGAGACATTCCGTGACATTGTTTGCCAGCAAATTGACACACTGCAAGGTTACTTTGATGCTTGTGCTGGAACTGGCATGAATCAGAAACAGGCGCCTCTGGCAGATGCACATGGCAGTGAAGTCTATGATAGCAATGACGGGTTGGATAATGATGCTGATGATGAAATGGAAGAACTATCAACCACACCTACTCCGGGTACTTTTCATCAGATTGGCATTAACTCTGGCCACAAGAGAACCACTTCGGATGGAGCTGCTGTGCTATCTATTGCTAATGCTAAGGGCGTTGATTTCAGGGGAGAGTCGTTCACATTTAAAGCCACCACTGCAGGCATCTTGGAAACACTTCAACACTGCATTGATATTATAAATAAGAGAGAAGACCACTGGCAGAGAAGATTGGATAAGGAAATAGAGAAACGGAAGAAAGCAGAGGCAGCTGTGAAAACAGCAGTCATCAATGCAAGGAAGCAAGCATTTATTGGAGGGCCAGATTTTGAGGAAGGACCACATAGTGCATTGAATGAAGAAGAATTCTATGATGCAATTGAAGTGGCTCTTGACCGTCAGGATGAAGAAGATGCAATGAAGGATTTTCAATCTAGCACATTTGTGCCCCCCTCAGAACTCATTGAGCAGGAGCCAGAACACAGAATGAAAGCTAAGGTTGATAAATGTCTGGAAGAATGCTACCAGATAGTTTCAGAAAATGTTGATCACAACTGGAGTTTGGCTTATGAGGATGGTGATATGAAGGTGTATCGGCGGGATTATGAAGAGGGTGGCATTGTTTGCGATTTCCTAAAAGCAACACACACAGTAACGGGAATAACTGCAAGAGAAATGGCTCACTACTTCTTTGACATTGATGTTCGCATGGATTGGGAGACCACGTTGGATTCTTCGAAAATATTAGAACAACTCAGTGACAGCACACTTATAGTGCATCAAATTTATAAGAGAGTCTGGCCTTCCTCACAGAGAGACACTGTTTTCTTATCACATATCCGAGAAATGCCTACCCATGATGCTGGGGAAAGACAAGTGAATGAAGTTGGCAGACCATGGATTGTTATGAATTATTCAATTGAACATCCTGATGCACCGATCAACAAGTTCGTTCGTGCTGTAGCTGTTGTAAGTTTATTTTGCCAAACATTAATTGAACCCAGACAGGAAGGAAACAAACTCAATCGAGATCATATATCCTGCAAAATTACCTACATTTCAAATGTTAACCCAGGAGGTTGGGCTCCACCATCTGTTGTGCGTGCTGTGTCCAAGCGTGAATACCCCAAGTTTCTCCGTCGACTCAGTTCATTCTGTCAGAATGCCTGTGAGGACAAGCCAATAACAATGTGAGCCCACAGTTGGAAAGTAACGGACAGAGTGATATTTAGCTTCCAACGCCCTTTCGGTCTTGCCGTTGGTGCAAGTGAATATCGATTCTGCAGGATGAAAATACGTGTTTTCAATAATATTGACATGACATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NRZ4	Ceramide transfer protein OS=Xenopus laevis OX=8355 GN=cert1 PE=2 SV=1
Q6P3Q6	Ceramide transfer protein OS=Xenopus tropicalis OX=8364 GN=cert1 PE=2 SV=1
Q6VVX2	Ceramide transfer protein OS=Cricetulus griseus OX=10029 GN=CERT1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF01852 all species →	START	START domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002913 all species →	Domain	START domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR051213 all species →	Family	START domain-containing lipid transfer	Interproscan
IPR023393 all species →	Homologous_superfamily	START-like domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19308 all species →	PHOSPHATIDYLCHOLINE TRANSFER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan
GO:0035621 all species →	Biological Process	ER to Golgi ceramide transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08283	COL4A3BP; collagen type IV alpha-3-binding protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.