Detailed information of g5168.t1 in Montipora capitata

Genomic Location: Sc0000100:393809...398100
NR annotation: XP_015754952.1, PREDICTED: THO complex subunit 3-like [Acropora digitifera]
Species Montipora capitata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q96J01THO complex subunit 3 OS=Homo sapiens OX=9606 GN=THOC3 PE=1 SV=1
Q8VE80THO complex subunit 3 OS=Mus musculus OX=10090 GN=Thoc3 PE=2 SV=1
Q29RH4THO complex subunit 3 OS=Bos taurus OX=9913 GN=THOC3 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007377 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan
PF07676
all species →		PD40WD40-like Beta Propeller RepeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR040132
all species →		FamilyTREX component Tex1/THOC3Interproscan
IPR011659
all species →		RepeatWD40-like beta propellerInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22839
all species →		THO COMPLEX SUBUNIT 3 THO3Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0000445
all species →		Cellular ComponentTHO complex part of transcription export complexInterproscan
GO:0006406
all species →		Biological ProcessmRNA export from nucleusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for g5168.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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