Gene detail

Detailed information of g518.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: WP_029918240.1, glycine cleavage system protein GcvH [Pelobacter seleniigenes]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WY55	Glycine cleavage system H protein OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=gcvH PE=1 SV=1
A9IWV1	Glycine cleavage system H protein OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) OX=382640 GN=gcvH PE=3 SV=1
Q98LT7	Glycine cleavage system H protein OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=gcvH PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000143 (this species only)
Orthogroup (gene family)	OG0000351 (this species only)
Orthogroup (gene family)	OG0001088 (this species only)
Orthogroup (gene family)	OG0002999 (this species only)
Orthogroup (gene family)	OG0003706 (this species only)
Orthogroup (gene family)	OG0004213 (this species only)
Orthogroup (gene family)	OG0004709 (this species only)
Orthogroup (gene family)	OG0006366 (this species only)
Orthogroup (gene family)	OG0020560 (this species only)
Orthogroup (gene family)	OG0059783 (this species only)
Orthogroup (gene family)	OG0171230 (this species only)
Orthogroup (gene family)	OG0171551 (this species only)
Orthogroup (gene family)	OG0171791 (this species only)
Orthogroup (gene family)	OG0173279 (this species only)
Orthogroup (gene family)	OG0174637 (this species only)
Transcription factor family	HMG · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00834 all species →	Ribul_P_3_epim	Ribulose-phosphate 3 epimerase family	Domain	Interproscan
PF01597 all species →	GCV_H	Glycine cleavage H-protein	Domain	Interproscan
PF00505 all species →	HMG_box	HMG (high mobility group) box	Domain	Interproscan
PF13906 all species →	AA_permease_C	C-terminus of AA_permease	Domain	Interproscan
PF13520 all species →	AA_permease_2	Amino acid permease	Family	Interproscan
PF21333 all species →	FST_N	Follistatin, N-terminal	Domain	Interproscan
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039863 all species →	Family	Dickkopf related protein 1-4	Interproscan
IPR000056 all species →	Family	Ribulose-phosphate 3-epimerase-like	Interproscan
IPR011060 all species →	Homologous_superfamily	Ribulose-phosphate binding barrel	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR002930 all species →	Family	Glycine cleavage system H-protein	Interproscan
IPR003016 all species →	Binding_site	2-oxo acid dehydrogenase, lipoyl-binding site	Interproscan
IPR017453 all species →	Family	Glycine cleavage system H-protein, subgroup	Interproscan
IPR033753 all species →	Family	Glycine cleavage system H-protein/Simiate	Interproscan
IPR000089 all species →	Domain	Biotin/lipoyl attachment	Interproscan
IPR011053 all species →	Homologous_superfamily	Single hybrid motif	Interproscan
IPR009071 all species →	Domain	High mobility group box domain	Interproscan
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR024940 all species →	Family	Transcription factor TCF/LEF	Interproscan
IPR029485 all species →	Domain	Cationic amino acid transporter, C-terminal	Interproscan
IPR002293 all species →	Family	Amino acid/polyamine transporter I	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR003645 all species →	Domain	Follistatin-like, N-terminal	Interproscan
IPR036773 all species →	Homologous_superfamily	TGF-beta binding (TB) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12113 all species →	DICKKOPF3-LIKE 3	Interproscan
PTHR11715 all species →	GLYCINE CLEAVAGE SYSTEM H PROTEIN	Interproscan
PTHR10373 all species →	TRANSCRIPTION FACTOR 7 FAMILY MEMBER	Interproscan
PTHR43243 all species →	INNER MEMBRANE TRANSPORTER YGJI-RELATED	Interproscan
PTHR13866 all species →	SPARC OSTEONECTIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0039706 all species →	Molecular Function	co-receptor binding	Interproscan
GO:0048019 all species →	Molecular Function	receptor antagonist activity	Interproscan
GO:0090090 all species →	Biological Process	negative regulation of canonical Wnt signaling pathway	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016857 all species →	Molecular Function	racemase and epimerase activity, acting on carbohydrates and derivatives	Interproscan
GO:0005960 all species →	Cellular Component	glycine cleavage complex	Interproscan
GO:0019464 all species →	Biological Process	glycine decarboxylation via glycine cleavage system	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0009249 all species →	Biological Process	protein lipoylation	Interproscan
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016055 all species →	Biological Process	Wnt signaling pathway	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan
GO:1990907 all species →	Cellular Component	beta-catenin-TCF complex	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006865 all species →	Biological Process	amino acid transport	Interproscan
GO:0015171 all species →	Molecular Function	amino acid transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005518 all species →	Molecular Function	collagen binding	Interproscan
GO:0048856 all species →	Biological Process	anatomical structure development	Interproscan
GO:0050840 all species →	Molecular Function	extracellular matrix binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02437	gcvH, GCSH; glycine cleavage system H protein	-	Lipoic acid metabolism	ko00785	deepkoala
K13865	SLC7A3, ATRC3; solute carrier family 7 (cationic amino acid transporter), member 3	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.