Detailed information of g519.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MCG6858996.1, aminomethyl-transferring glycine dehydrogenase [Salaquimonas sp.]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q98LT6Glycine dehydrogenase (decarboxylating) OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=gcvP PE=3 SV=1
P62921Glycine dehydrogenase (decarboxylating) OS=Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M) OX=224914 GN=gcvP PE=3 SV=1
A9WZ23Glycine dehydrogenase (decarboxylating) OS=Brucella suis (strain ATCC 23445 / NCTC 10510) OX=470137 GN=gcvP PE=3 SV=1
Gene familySubfamily
Transcription Factors Familyzf-C2H2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13768VWA_3von Willebrand factor type A domainDomainInterproscan
PF08473VGCC_alpha2Neuronal voltage-dependent calcium channel alpha 2acdFamilyInterproscan
PF00090TSP_1Thrombospondin type 1 domainDomainInterproscan
PF00431CUBCUB domainDomainInterproscan
PF12874zf-metZinc-finger of C2H2 typeDomainInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF12352V-SNARE_CSnare region anchored in the vesicle membrane C-terminusDomainInterproscan
PF05008V-SNAREVesicle transport v-SNARE protein N-terminusFamilyInterproscan
PF21056ZSWIM1-3_RNaseH-likeZinc finger SWIM domain-containing protein 1/3, RNaseH-like domainDomainInterproscan
PF02347GDC-PGlycine cleavage system P-proteinDomainInterproscan
PF21478GcvP2_CGlycine dehydrogenase, C-terminal domainDomainInterproscan
PF00560LRR_1Leucine Rich RepeatRepeatInterproscan
PF12349Sterol-sensingSterol-sensing domain of SREBP cleavage-activationFamilyInterproscan
PF01549ShKShK domain-likeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR052728FamilyOxygen and lipid transport regulatorInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR051173FamilyVoltage-dependent calcium channel subunit alpha-2/deltaInterproscan
IPR013680DomainVoltage-dependent calcium channel, alpha-2/delta subunit, conserved regionInterproscan
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR035914Homologous_superfamilySpermadhesin, CUB domain superfamilyInterproscan
IPR038877FamilyThrombospondin type-1 domain-containing protein 1Interproscan
IPR000859DomainCUB domainInterproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR038407Homologous_superfamilyVesicle transport v-SNARE, N-terminal domain superfamilyInterproscan
IPR000727DomainTarget SNARE coiled-coil homology domainInterproscan
IPR010989Homologous_superfamilySNAREInterproscan
IPR027027FamilyGOSR2/Membrin/Bos1Interproscan
IPR007705DomainVesicle transport v-SNARE, N-terminalInterproscan
IPR052579FamilyZinc finger SWIM domain-containing proteinInterproscan
IPR048324DomainZSWIM1/3, RNaseH-like domainInterproscan
IPR020581FamilyGlycine cleavage system P proteinInterproscan
IPR003437FamilyGlycine dehydrogenase (decarboxylating)Interproscan
IPR015422Homologous_superfamilyPyridoxal phosphate-dependent transferase, small domainInterproscan
IPR015424Homologous_superfamilyPyridoxal phosphate-dependent transferaseInterproscan
IPR049315DomainGlycine cleavage system P-protein, N-terminal domainInterproscan
IPR049316DomainGlycine dehydrogenase, C-terminal domainInterproscan
IPR015421Homologous_superfamilyPyridoxal phosphate-dependent transferase, major domainInterproscan
IPR032675Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR001611RepeatLeucine-rich repeatInterproscan
IPR000731DomainSterol-sensing domainInterproscan
IPR052081FamilyDispatched hedgehog regulatorInterproscan
IPR003582DomainShKT domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR023211Homologous_superfamilyDNA polymerase, palm domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11161O-ACYLTRANSFERASEInterproscan
PTHR10166VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATEDInterproscan
PTHR16311THROMBOSPONDIN TYPE I DOMAIN-CONTAINING 1Interproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR21230VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATEDInterproscan
PTHR31569SWIM-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR11773GLYCINE DEHYDROGENASE, DECARBOXYLATINGInterproscan
PTHR45951PROTEIN DISPATCHED-RELATEDInterproscan
PTHR31511PROTEIN CBG23764Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005245Molecular Functionvoltage-gated calcium channel activityInterproscan
GO:0005891Cellular Componentvoltage-gated calcium channel complexInterproscan
GO:0071944Cellular Componentcell peripheryInterproscan
GO:0000149Molecular FunctionSNARE bindingInterproscan
GO:0005484Molecular FunctionSNAP receptor activityInterproscan
GO:0005789Cellular Componentendoplasmic reticulum membraneInterproscan
GO:0005794Cellular ComponentGolgi apparatusInterproscan
GO:0006891Biological Processintra-Golgi vesicle-mediated transportInterproscan
GO:0006896Biological ProcessGolgi to vacuole transportInterproscan
GO:0006906Biological Processvesicle fusionInterproscan
GO:0012507Cellular ComponentER to Golgi transport vesicle membraneInterproscan
GO:0016236Biological ProcessmacroautophagyInterproscan
GO:0031201Cellular ComponentSNARE complexInterproscan
GO:0031902Cellular Componentlate endosome membraneInterproscan
GO:0042147Biological Processretrograde transport, endosome to GolgiInterproscan
GO:0048280Biological Processvesicle fusion with Golgi apparatusInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0004375Molecular Functionglycine dehydrogenase (decarboxylating) activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0005960Cellular Componentglycine cleavage complexInterproscan
GO:0006546Biological Processglycine catabolic processInterproscan
GO:0016594Molecular Functionglycine bindingInterproscan
GO:0019464Biological Processglycine decarboxylation via glycine cleavage systemInterproscan
GO:0030170Molecular Functionpyridoxal phosphate bindingInterproscan
GO:0006544Biological Processglycine metabolic processInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0007224Biological Processsmoothened signaling pathwayInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K08493VTI1; vesicle transport through interaction with t-SNAREs 1-Lipoic acid metabolismko00785deepkoala
Membrane traffickingko04131deepkoala

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