Gene detail

Detailed information of g5196.t1 in Montipora capitata

Genomic Location: Sc0000101:152812...176109
NR annotation: XP_029207376.2, LOW QUALITY PROTEIN: pyruvate carboxylase, mitochondrial-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g5196.t1

atgttgcgtgtacatgcatcatactgcaagaaaatactacagcaacatgtctctcacggaaatggaatctggtcaacatgccgttatattcatgctggaaacaagttttgttcaagcaacaagcctgagcctcgcataactcaaatcaagaagattcttgttgcaaatagaggagaaattgcaatcagagttttccgtgccgctgcagaagctggcattgaaacagttgcaatctactcagaacaagatgcaaatcttatgcacaggcaaaaggctgatgaagcataccttattggcaagggaatgccaccagtagctgcttatttaaatatccctgagataataaaaatagcaaaggaaactgagactgatgcaattcacccaggatatggatttctctcagagagagcaaactttgctgaggcttgtgtcaagaatggccttattttcattggtccttcgccatcgatagtgaagcttatgggtgacaaagttgaggcacggaaagtcgcaataaatgctggagttcctgtggttcctggtacagagacacctataagaactgctgaggaagccaaagcattctgtgaggagcatgggctgcctgtgatcaccaaagcagcctatggtggtggtgggcgtggcatgagggttgttcataaaatggaagatgttgaagaatacttcaatttggccagtaacgaagcttttgctgcctttggtgatggctcaatgtttattgagaggtttgttgcaaagccaagacacattgaagtacaggtggtgggggatgcctatggaaatattgtgcacctttatgaacgtgactgttctgtacagcgccggcaccagaagattcttgaaattgcaccagctccactgttagatatcgaaatcagggacaagatgacaagagatgctattacgctctgtcaggcagttggatatgagaatgccggcactgtggagttccttttggaccctgagggtaatcattatttcatggaggtcaatgccaggctgcaagtggagcacactgtaacggaggaaataacaggtgttgatctggtgagaacacaaatcggtgtagcagaaggaaagactttagaggagttggggctgcgtcaagatgatatcaaagttacaggatcagcccttcaagcacgaataacgactgaagatcctgccaatgacttcacccctgacactggtcggattgaggtttttcgtacaggagagggcatgggaatccgtttggatggaagttctatgttccctggtgctgtgatttctcctcattacgactccctgctgacaaaagtgataagtcatggctcgaaccacagagatgcggctaataaacttctgagggctttgagggaattccgagtcagaggtgtaaagaccaacattcctttcctgatgaatgttctcaaagaggaggagttccttggtggagtggtaacaactgactttattctaaacagaccagaactgttgaaagtagaacgaggtcaaaatcgtgctcagaaactgcttcaataccttggtaatgttatggtgaatggtccgtgtactccgctggcaacgggactgaagccatccctggttgctcctgaagccccagaggttcccaaagcatcaagtgctggcaatggttgttatctgagacccagtggctttcgtgacgtgttgcttcaacaaggaccagaagggtttgccaaaaatgttcgcaagtgcggccgacttcttcttacagatacaacattccgagacgcacatcagtcactactggctaccagagtacgcacccatgatatgctgaaagttgcgccttttgtgtcgcattactttgctaatgcttttagtttagaatgttggggaggtgcaacgtttgacgttgcgctccgctttctgtacgagtgtccatgggaacgactggcgctccttcgtgaagcagtgcccaacattccctttcagatgttgcttagaggtgccaatgccgtgggttacaccagctaccctgataatgtagtgtttaaattctgtgagaaagcgcacgaaatgggaatggatatctttagggtgtttgattccctgaattatctccctaacttgcagcttggtattgaagccgctggccaggcgggtggtgttgtggaagcagcaatttcatacaccggcgacgtatccaatccaaaaggcacgaagtacaatattgactactacatgaatctggcgactgaactggcgaaagcgggcattcatgtgctctgtatcaaggatatggctggtgtcttgaaacccaatggtgcctcgctgttgattggttccctacgtgcgcagtttcccaagctgcctatccacgtgcatacccatgataccgctggagcaggcgtagcctccatgctggccgcgtcggaggctggagctgatgtggtggatgtggcagtggattccctctcaggaatgacgtcacagcccagtatgggcgccattgttgctgccttgcaaaacacggaaaaggaaacaggtattcctatcgaacgagtccatgaatacagcgagtactgggaacgagctcgccagctgtacgcgccatttgaaagcacagtgacaatgaagacaggaaatgcggacgtctacgaaaacgagattccggggggacagtacacgaatcttcatttccaggcttactccctcgggctggctgatcagtttacagaagtcaagaaaaagtacacaatggcgaataaactcttgggagatgtagtcaaggtgacacccacttccaaagttgtcggagatttagctcaatttatggtacagaataaactcgatgaacgcgacgttctcctcaaggccgatgaacttgattttccttcttcagttgtggaatttatgcagggttacctcggacaaccccacgggggattcccagaaccacttagaaccaagattttgaagggacgtcctaccattgaaggcagaccgggtgaatctttggagccactcgacttcgatgccttgaagtcaaagctgcaagaagattttggacaaaatgccatccaagatcaagacgtccttagcgctgctttgtatccaaaagtatttagagattacatgttgtttagagaagagttcggtccagttaacggacttcctaccaggctgttctttactggacccgatattggggaagagttccaagtggagattcaaccaggaaaagttttgaacatcaaggtccttgccatcagtaatcttcaccccaatggacagagagaagtgttctgtgagatgaatggacagcttaggactgttatggtggaggataaatctgtcaccaagacacttgaacgacaccccaaggcagacaagtcagttaggggctcagtcggggcccccatgccaggaaaagtagttggcattcgtgtcaaagagaaggaagtagtgaagaaaggtgcacctttggttgtgcttagtgccatgaagatggaaactaataaatcggaccacaatgtgaaactctccagagctctttcctatatcctgcgacatggagcagcgagagagggacttcaaatgacagaaggttttgtttttgtggatgatcttctaaagctacgacagttcaagcattattgcgaggatgacatcagacaagttgttgccaataatgacaagcaacggtttgctcttagagatgatccatcaacaaaaagactacaaatcagagccaatcaaggacacaccatgcaagttgatgatattgagttggaactcataacagaccatacaaaggcaccagtggtcttacatggcacttatcgagattgttggccacaaataaaagctcagggtttgtctagaatgaagaggaaccacatccactttgcacctggagaacctggtgaagagggtgtgataagtggaatgaggagaagctgtgaagtcttgatctttgtggatctcaaaaaggccttgagtgcaaaagaactgctagcaacagaatttccttaa

Transcript

g5196.t1

ATGTTGCGTGTACATGCATCATACTGCAAGAAAATACTACAGCAACATGTCTCTCACGGAAATGGAATCTGGTCAACATGCCGTTATATTCATGCTGGAAACAAGTTTTGTTCAAGCAACAAGCCTGAGCCTCGCATAACTCAAATCAAGAAGATTCTTGTTGCAAATAGAGGAGAAATTGCAATCAGAGTTTTCCGTGCCGCTGCAGAAGCTGGCATTGAAACAGTTGCAATCTACTCAGAACAAGATGCAAATCTTATGCACAGGCAAAAGGCTGATGAAGCATACCTTATTGGCAAGGGAATGCCACCAGTAGCTGCTTATTTAAATATCCCTgagataataaaaatagcaaagGAAACTGAGACTGATGCAATTCACCCAGGATATGGATTTCTCTCAGAGAGAGCAAACTTTGCTGAGGCTTGTGTCAAGAATGGCCTTATTTTCATTGGTCCTTCGCCATCGATAGTGAAGCTTATGGGTGACAAAGTTGAGGCACGGAAAGTCGCAATAAATGCTGGAGTTCCTGTGGTTCCTGGTACAGAGACACCTATAAGAACTGCTGAGGAAGCCAAAGCATTCTGTGAGGAGCATGGGCTGCCTGTGATCACCAAAGCAGCCTATGGTGGTGGTGGGCGTGGCATGAGGGTTGTTCATAAAATGGAAGATGTTGAAGAATACTTCAATTTGGCCAGTAACGAAGCTTTTGCTGCCTTTGGTGATGGCTCAATGTTTATTGAGAGGTTTGTTGCAAAGCCAAGACACATTGAAGTACAGGTGGTGGGGGATGCCTATGGAAATATTGTGCACCTTTATGAACGTGACTGTTCTGTACAGCGCCGGCACCAGAAGATTCTTGAAATTGCACCAGCTCCACTGTTAGATATCGAAATCAGGGACAAGATGACAAGAGATGCTATTACGCTCTGTCAGGCAGTTGGATATGAGAATGCCGGCACTGTGGAGTTCCTTTTGGACCCTGAGGGTAATCATTATTTCATGGAGGTCAATGCCAGGCTGCAAGTGGAGCACACTGTAACGGAGGAAATAACAGGTGTTGATCTGGTGAGAACACAAATCGGTGTAGCAGAAGGAAAGACTTTAGAGGAGTTGGGGCTGCGTCAAGATGATATCAAAGTTACAGGATCAGCCCTTCAAGCACGAATAACGACTGAAGATCCTGCCAATGACTTCACCCCTGACACTGGTCGGATTGAGGTTTTTCGTACAGGAGAGGGCATGGGAATCCGTTTGGATGGAAGTTCTATGTTCCCTGGTGCTGTGATTTCTCCTCATTACGACTCCCTGCTGACAAAAGTGATAAGTCATGGCTCGAACCACAGAGATGCGGCTAATAAACTTCTGAGGGCTTTGAGGGAATTCCGAGTCAGAGGTGTAAAGACCAACATTCCTTTCCTGATGAATGTTCTCAAAGAGGAGGAGTTCCTTGGTGGAGTGGTAACAACTGACTTTATTCTAAACAGACCAGAACTGTTGAAAGTAGAACGAGGTCAAAATCGTGCTCAGAAACTGCTTCAATACCTTGGTAATGTTATGGTGAATGGTCCGTGTACTCCGCTGGCAACGGGACTGAAGCCATCCCTGGTTGCTCCTGAAGCCCCAGAGGTTCCCAAAGCATCAAGTGCTGGCAATGGTTGTTATCTGAGACCCAGTGGCTTTCGTGACGTGTTGCTTCAACAAGGACCAGAAGGGTTTGCCAAAAATGTTCGCAAGTGCGGCCGACTTCTTCTTACAGATACAACATTCCGAGACGCACATCAGTCACTACTGGCTACCAGAGTACGCACCCATGATATGCTGAAAGTTGCGCCTTTTGTGTCGCATTACTTTGCTAATGCTTTTAGTTTAGAATGTTGGGGAGgtgCAACGTTTGACGTTGCGCTCCGCTTTCTGTACGAGTGTCCATGGGAACGACTGGCGCTCCTTCGTGAAGCAGTGCCCAACATTCCCTTTCAGATGTTGCTTAGAGGTGCCAATGCCGTGGGTTACACCAGCTACCCTGATAATGTAGTGTTTAAATTCTGTGAGAAAGCGCACGAAATGGGAATGGATATCTTTAGGGTGTTTGATTCCCTGAATTATCTCCCTAACTTGCAGCTTGGTATTGAAGCCGCTGGCCAGGCGGGTGGTGTTGTGGAAGCAGCAATTTCATACACCGGCGACGTATCCAATCCAAAAGGCACGAAGTACAATATTGACTACTACATGAATCTGGCGACTGAACTGGCGAAAGCGGGCATTCATGTGCTCTGTATCAAGGATATGGCTGGTGTCTTGAAACCCAATGGTGCCTCGCTGTTGATTGGTTCCCTACGTGCGCAGTTTCCCAAGCTGCCTATCCACGTGCATACCCATGATACCGCTGGAGCAGGCGTAGCCTCCATGCTGGCCGCGTCGGAGGCTGGAGCTGATGTGGTGGATGTGGCAGTGGATTCCCTCTCAGGAATGACGTCACAGCCCAGTATGGGCGCCATTGTTGCTGCCTTGCAAAACACGGAAAAGGAAACAGGTATTCCTATCGAACGAGTCCATGAATACAGCGAGTACTGGGAACGAGCTCGCCAGCTGTACGCGCCATTTGAAAGCACAGTGACAATGAAGACAGGAAATGCGGACGTCTACGAAAACGAGATTCCGGGGGGACAGTACACGAATCTTCATTTCCAGGCTTACTCCCTCGGGCTGGCTGATCAGTTTACAGAAGTCAAGAAAAAGTACACAATGGCGAATAAACTCTTGGGAGATGTAGTCAAGGTGACACCCACTTCCAAAGTTGTCGGAGATTTAGCTCAATTTATGGTACAGAATAAACTCGATGAACGCGACGTTCTCCTCAAGGCCGATGAACTTGATTTTCCTTCTTCAGTTGTGGAATTTATGCAGGGTTACCTCGGACAACCCCACGGGGGATTCCCAGAACCACTTAGAACCAAGATTTTGAAGGGACGTCCTACCATTGAAGGCAGACCGGGTGAATCTTTGGAGCCACTCGACTTCGATGCCTTGAAGTCAAAGCTGCAAGAAGATTTTGGACAAAATGCCATCCAAGATCAAGACGTCCTTAGCGCTGCTTTGTATCCAAAAGTATTTAGAGATTACATGTTGTTTAGAGAAGAGTTCGGTCCAGTTAACGGACTTCCTACCAGGCTGTTCTTTACTGGACCCGATATTGGGGAAGAGTTCCAAGTGGAGATTCAACCAGGAAAAGTTTTGAACATCAAGGTCCTTGCCATCAGTAATCTTCACCCCAATGGACAGAGAGAAGTGTTCTGTGAGATGAATGGACAGCTTAGGACTGTTATGGTGGAGGATAAATCTGTCACCAAGACACTTGAACGACACCCCAAGGCAGACAAGTCAGTTAGGGGCTCAGTCGGGGCCCCCATGCCAGGAAAAGTAGTTGGCATTCGTGTCAAAGAGAAGGAAGTAGTGAAGAAAGGTGCACCTTTGGTTGTGCTTAGTGCCATGAAGATGGAAACTAATAAATCGGACCACAATGTGAAACTCTCCAGAGCTCTTTCCTATATCCTGCGACATGGAGCAGCGAGAGAGGGACTTCAAATGACAGAAGgttttgtttttgtggaTGATCTTCTAAAGCTACGACAGTTCAAGCATTATTGCGAGGATGACATCAGACAAGTTGTTGCCAATAATGACAAGCAACGGTTTGCTCTTAGAGATGATCCATCAACAAAAAGACTACAAATCAGAGCCAATCAAGGACACACCATGCAAGTTGATGATATTGAGTTGGAACTCATAACAGACCATACAAAGGCACCAGTGGTCTTACATGGCACTTATCGAGATTGTTGGCCACAAATAAAAGCTCAGGGTTTGTCTAGAATGAAGAGGAACCACATCCACTTTGCACCTGGAGAACCTGGTGAAGAGGGTGTGATAAGTGGAATGAGGAGAAGCTGTGAAGTCTTGATCTTTGTGGATCTCAAAAAGGCCTTGAGTGCAAAAGAACTGCTAGCAACAGAATTTCCTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q29RK2	Pyruvate carboxylase, mitochondrial OS=Bos taurus OX=9913 GN=PC PE=2 SV=2
Q05920	Pyruvate carboxylase, mitochondrial OS=Mus musculus OX=10090 GN=Pc PE=1 SV=1
P52873	Pyruvate carboxylase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Pc PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003338 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02785 all species →	Biotin_carb_C	Biotin carboxylase C-terminal domain	Domain	Interproscan
PF02786 all species →	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan
PF01885 all species →	PTS_2-RNA	RNA 2'-phosphotransferase, Tpt1 / KptA family	Family	Interproscan
PF00682 all species →	HMGL-like	HMGL-like	Domain	Interproscan
PF00289 all species →	Biotin_carb_N	Biotin carboxylase, N-terminal domain	Domain	Interproscan
PF02436 all species →	PYC_OADA	Conserved carboxylase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042080 all species →	Homologous_superfamily	RNA 2'-phosphotransferase, N-terminal domain	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR011054 all species →	Homologous_superfamily	Rudiment single hybrid motif	Interproscan
IPR005930 all species →	Family	Pyruvate carboxylase	Interproscan
IPR005479 all species →	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR005482 all species →	Domain	Biotin carboxylase, C-terminal	Interproscan
IPR011764 all species →	Domain	Biotin carboxylation domain	Interproscan
IPR011053 all species →	Homologous_superfamily	Single hybrid motif	Interproscan
IPR042081 all species →	Homologous_superfamily	RNA 2'-phosphotransferase, C-terminal domain	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR002745 all species →	Family	Phosphotransferase KptA/Tpt1	Interproscan
IPR000891 all species →	Domain	Pyruvate carboxyltransferase	Interproscan
IPR005481 all species →	Domain	Biotin carboxylase-like, N-terminal domain	Interproscan
IPR003379 all species →	Domain	Carboxylase, conserved domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43778 all species →	PYRUVATE CARBOXYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004736 all species →	Molecular Function	pyruvate carboxylase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006090 all species →	Biological Process	pyruvate metabolic process	Interproscan
GO:0006094 all species →	Biological Process	gluconeogenesis	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0016740 all species →	Molecular Function	transferase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01958	PC, pyc; pyruvate carboxylase	EC:6.4.1.1	Carbon fixation pathways in prokaryotes	ko00720	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.