Gene detail

Detailed information of g52.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_029204240.1, cytoplasmic dynein 1 light intermediate chain 1-like [Acropora millepora]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P31421	Metabotropic glutamate receptor 2 OS=Rattus norvegicus OX=10116 GN=Grm2 PE=1 SV=1
Q14BI2	Metabotropic glutamate receptor 2 OS=Mus musculus OX=10090 GN=Grm2 PE=1 SV=2
Q14416	Metabotropic glutamate receptor 2 OS=Homo sapiens OX=9606 GN=GRM2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000030 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000269 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000270 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000366 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000765 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001201 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001226 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004337 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006884 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007184 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0010294 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0010630 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02140 all species →	Gal_Lectin	Galactose binding lectin domain	Domain	Interproscan
PF01607 all species →	CBM_14	Chitin binding Peritrophin-A domain	Domain	Interproscan
PF04916 all species →	Phospholip_B	Phospholipase B	Family	Interproscan
PF05679 all species →	CHGN	Chondroitin N-acetylgalactosaminyltransferase	Family	Interproscan
PF05783 all species →	DLIC	Dynein light intermediate chain (DLIC)	Family	Interproscan
PF21271 all species →	SNX17-31_F2_FERM	Sortin nexin 17/31, FERM domain, F2 lobe	Domain	Interproscan
PF18116 all species →	SNX17_FERM_C	Sorting Nexin 17 FERM C-terminal domain	Domain	Interproscan
PF01094 all species →	ANF_receptor	Receptor family ligand binding region	Family	Interproscan
PF00003 all species →	7tm_3	7 transmembrane sweet-taste receptor of 3 GCPR	Domain	Interproscan
PF07562 all species →	NCD3G	Nine Cysteines Domain of family 3 GPCR	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000922 all species →	Domain	D-galactoside/L-rhamnose binding SUEL lectin domain	Interproscan
IPR002557 all species →	Domain	Chitin binding domain	Interproscan
IPR036508 all species →	Homologous_superfamily	Chitin binding domain superfamily	Interproscan
IPR043159 all species →	Homologous_superfamily	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Interproscan
IPR007000 all species →	Family	Phospholipase B-like	Interproscan
IPR008428 all species →	Family	Chondroitin N-acetylgalactosaminyltransferase	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR051227 all species →	Family	Chondroitin sulfate glycosyltransferase	Interproscan
IPR036716 all species →	Homologous_superfamily	Pesticidal crystal protein, N-terminal domain superfamily	Interproscan
IPR022780 all species →	Family	Dynein family light intermediate chain	Interproscan
IPR048767 all species →	Domain	Sortin nexin 17/31, FERM domain, F2 lobe	Interproscan
IPR040842 all species →	Domain	Sorting nexin-17/31, FERM domain	Interproscan
IPR037831 all species →	Family	SNX17/27/31-like	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR015797 all species →	Homologous_superfamily	NUDIX hydrolase-like domain superfamily	Interproscan
IPR001828 all species →	Domain	Receptor, ligand binding region	Interproscan
IPR038550 all species →	Homologous_superfamily	GPCR, family 3, nine cysteines domain superfamily	Interproscan
IPR028082 all species →	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR000337 all species →	Family	GPCR, family 3	Interproscan
IPR017978 all species →	Domain	GPCR family 3, C-terminal	Interproscan
IPR017979 all species →	Conserved_site	GPCR, family 3, conserved site	Interproscan
IPR050726 all species →	Family	Metabotropic Glutamate Receptor	Interproscan
IPR011500 all species →	Domain	GPCR, family 3, nine cysteines domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46780 all species →	PROTEIN EVA-1	Interproscan
PTHR12370 all species →	PHOSPHOLIPASE B-RELATED	Interproscan
PTHR12369 all species →	CHONDROITIN SYNTHASE	Interproscan
PTHR12431 all species →	SORTING NEXIN 17 AND 27	Interproscan
PTHR31835 all species →	URIDINE DIPHOSPHATE GLUCOSE PYROPHOSPHATASE	Interproscan
PTHR34615 all species →	PX DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR24060 all species →	METABOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0008061 all species →	Molecular Function	chitin binding	Interproscan
GO:0004620 all species →	Molecular Function	phospholipase activity	Interproscan
GO:0009395 all species →	Biological Process	phospholipid catabolic process	Interproscan
GO:0008376 all species →	Molecular Function	acetylgalactosaminyltransferase activity	Interproscan
GO:0032580 all species →	Cellular Component	Golgi cisterna membrane	Interproscan
GO:0030206 all species →	Biological Process	chondroitin sulfate biosynthetic process	Interproscan
GO:0047238 all species →	Molecular Function	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity	Interproscan
GO:0090729 all species →	Molecular Function	toxin activity	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:1990126 all species →	Biological Process	endocytic recycling	Interproscan
GO:0052751 all species →	Molecular Function	GDP-mannose hydrolase activity	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0001640 all species →	Molecular Function	adenylate cyclase inhibiting G protein-coupled glutamate receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007216 all species →	Biological Process	G protein-coupled glutamate receptor signaling pathway	Interproscan
GO:0051966 all species →	Biological Process	regulation of synaptic transmission, glutamatergic	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13499	CHSY; chondroitin sulfate synthase	EC:2.4.1.175 EC:2.4.1.226	Glycosyltransferases	ko01003	deepkoala
K17929	SNX17; sorting nexin-17	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala
K20287	PLIN3; perilipin-3	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →