Detailed information of g520.t1 in Montipora capitata

Genomic Location: Sc0000005:58382...86265
NR annotation: XP_044183151.1, uncharacterized protein LOC114970278 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9DBI0Transmembrane protease serine 6 OS=Mus musculus OX=10090 GN=Tmprss6 PE=1 SV=4
Q8IU80Transmembrane protease serine 6 OS=Homo sapiens OX=9606 GN=TMPRSS6 PE=1 SV=3
P14272Plasma kallikrein OS=Rattus norvegicus OX=10116 GN=Klkb1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003521 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00058
all species →		Ldl_recept_bLow-density lipoprotein receptor repeat class BRepeatInterproscan
PF13927
all species →		Ig_3Immunoglobulin domainDomainInterproscan
PF00084
all species →		SushiSushi repeat (SCR repeat)DomainInterproscan
PF00089
all species →		TrypsinTrypsinDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003599
all species →		DomainImmunoglobulin subtypeInterproscan
IPR001254
all species →		DomainSerine proteases, trypsin domainInterproscan
IPR000033
all species →		RepeatLDLR class B repeatInterproscan
IPR043504
all species →		Homologous_superfamilyPeptidase S1, PA clan, chymotrypsin-like foldInterproscan
IPR011042
all species →		Homologous_superfamilySix-bladed beta-propeller, TolB-likeInterproscan
IPR003598
all species →		DomainImmunoglobulin subtype 2Interproscan
IPR018114
all species →		Active_siteSerine proteases, trypsin family, histidine active siteInterproscan
IPR035976
all species →		Homologous_superfamilySushi/SCR/CCP superfamilyInterproscan
IPR000436
all species →		DomainSushi/SCR/CCP domainInterproscan
IPR009003
all species →		Homologous_superfamilyPeptidase S1, PA clanInterproscan
IPR050778
all species →		FamilyCueball/EGF/LRP/NidogenInterproscan
IPR001314
all species →		FamilyPeptidase S1A, chymotrypsin familyInterproscan
IPR007110
all species →		DomainImmunoglobulin-like domainInterproscan
IPR033116
all species →		Active_siteSerine proteases, trypsin family, serine active siteInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR036179
all species →		Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46513
all species →		VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004252
all species →		Molecular Functionserine-type endopeptidase activityInterproscan
GO:0006508
all species →		Biological ProcessproteolysisInterproscan
GO:0017147
all species →		Molecular FunctionWnt-protein bindingInterproscan
GO:0042813
all species →		Molecular FunctionWnt receptor activityInterproscan
GO:0060070
all species →		Biological Processcanonical Wnt signaling pathwayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for g520.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g520.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples
22TPM > 0
3Conditions
32.4Max TPM
6.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organisms · ambient pH treatment 21 10 6.22 32.42
whole organisms · low pH treatment 15 6 5.04 27.69
whole organisms · extra low pH treatment pH treatment 12 6 7.21 32.15

Per sample · hover a bar for the full sample record

Show the sample table (48 samples)
SRA runConditionTissueDevelopmental stage TreatmentStudyTPM
SRR11452222 whole organisms · ambient pH treatment whole organisms planulae ambient pH treatment SRP254626 32.42
SRR11452230 whole organisms · ambient pH treatment whole organisms planulae ambient pH treatment SRP254626 26.89
SRR11452228 whole organisms · ambient pH treatment whole organisms planulae ambient pH treatment SRP254626 25.22
SRR11452232 whole organisms · ambient pH treatment whole organisms blastula ambient pH treatment SRP254626 13.84
SRR11452234 whole organisms · ambient pH treatment whole organisms morula ambient pH treatment SRP254626 12.02
SRR11452231 whole organisms · ambient pH treatment whole organisms blastula ambient pH treatment SRP254626 10.56
SRR11452233 whole organisms · ambient pH treatment whole organisms morula ambient pH treatment SRP254626 7.24
SRR11452242 whole organisms · ambient pH treatment whole organisms gastrula ambient pH treatment SRP254626 1.47
SRR11452237 whole organisms · ambient pH treatment whole organisms gastrula ambient pH treatment SRP254626 0.65
SRR11452243 whole organisms · ambient pH treatment whole organisms gastrula ambient pH treatment SRP254626 0.36
SRR11452217 whole organisms · ambient pH treatment whole organisms fertilized embryo ambient pH treatment SRP254626 0.00
SRR11452240 whole organisms · ambient pH treatment whole organisms fertilized embryo ambient pH treatment SRP254626 0.00
SRR11452246 whole organisms · ambient pH treatment whole organisms prawn chip ambient pH treatment SRP254626 0.00
SRR11452250 whole organisms · ambient pH treatment whole organisms prawn chip ambient pH treatment SRP254626 0.00
SRR11452251 whole organisms · ambient pH treatment whole organisms egg ambient pH treatment SRP254626 0.00
SRR11452252 whole organisms · ambient pH treatment whole organisms prawn chip ambient pH treatment SRP254626 0.00
SRR11452254 whole organisms · ambient pH treatment whole organisms cleavage ambient pH treatment SRP254626 0.00
SRR11452259 whole organisms · ambient pH treatment whole organisms cleavage ambient pH treatment SRP254626 0.00
SRR11452260 whole organisms · ambient pH treatment whole organisms cleavage ambient pH treatment SRP254626 0.00
SRR11452262 whole organisms · ambient pH treatment whole organisms egg ambient pH treatment SRP254626 0.00
SRR11452263 whole organisms · ambient pH treatment whole organisms egg ambient pH treatment SRP254626 0.00
SRR11452221 whole organisms · low pH treatment whole organisms planulae low pH treatment SRP254626 27.69
SRR11452224 whole organisms · low pH treatment whole organisms planulae low pH treatment SRP254626 23.30
SRR11452223 whole organisms · low pH treatment whole organisms planulae low pH treatment SRP254626 22.88
SRR11452241 whole organisms · low pH treatment whole organisms gastrula low pH treatment SRP254626 0.93
SRR11452236 whole organisms · low pH treatment whole organisms gastrula low pH treatment SRP254626 0.47
SRR11452258 whole organisms · low pH treatment whole organisms cleavage low pH treatment SRP254626 0.30
SRR11452216 whole organisms · low pH treatment whole organisms fertilized embryo low pH treatment SRP254626 0.00
SRR11452218 whole organisms · low pH treatment whole organisms fertilized embryo low pH treatment SRP254626 0.00
SRR11452229 whole organisms · low pH treatment whole organisms fertilized embryo low pH treatment SRP254626 0.00
SRR11452238 whole organisms · low pH treatment whole organisms gastrula low pH treatment SRP254626 0.00
SRR11452245 whole organisms · low pH treatment whole organisms prawn chip low pH treatment SRP254626 0.00
SRR11452247 whole organisms · low pH treatment whole organisms prawn chip low pH treatment SRP254626 0.00
SRR11452249 whole organisms · low pH treatment whole organisms prawn chip low pH treatment SRP254626 0.00
SRR11452253 whole organisms · low pH treatment whole organisms cleavage low pH treatment SRP254626 0.00
SRR11452255 whole organisms · low pH treatment whole organisms cleavage low pH treatment SRP254626 0.00
SRR11452227 whole organisms · extra low pH treatment pH treatment whole organisms planulae extra low pH treatment pH treatment SRP254626 32.15
SRR11452225 whole organisms · extra low pH treatment pH treatment whole organisms planulae extra low pH treatment pH treatment SRP254626 30.74
SRR11452226 whole organisms · extra low pH treatment pH treatment whole organisms planulae extra low pH treatment pH treatment SRP254626 22.51
SRR11452239 whole organisms · extra low pH treatment pH treatment whole organisms gastrula extra low pH treatment pH treatment SRP254626 0.54
SRR11452220 whole organisms · extra low pH treatment pH treatment whole organisms fertilized embryo extra low pH treatment pH treatment SRP254626 0.34
SRR11452235 whole organisms · extra low pH treatment pH treatment whole organisms gastrula extra low pH treatment pH treatment SRP254626 0.27
SRR11452219 whole organisms · extra low pH treatment pH treatment whole organisms fertilized embryo extra low pH treatment pH treatment SRP254626 0.00
SRR11452244 whole organisms · extra low pH treatment pH treatment whole organisms prawn chip extra low pH treatment pH treatment SRP254626 0.00
SRR11452248 whole organisms · extra low pH treatment pH treatment whole organisms prawn chip extra low pH treatment pH treatment SRP254626 0.00
SRR11452256 whole organisms · extra low pH treatment pH treatment whole organisms cleavage extra low pH treatment pH treatment SRP254626 0.00
SRR11452257 whole organisms · extra low pH treatment pH treatment whole organisms cleavage extra low pH treatment pH treatment SRP254626 0.00
SRR11452261 whole organisms · extra low pH treatment pH treatment whole organisms fertilized embryo extra low pH treatment pH treatment SRP254626 0.00

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora capitata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

DirectionPartnersMost correlated partnerPCC
Positively correlated51g27985.t10.993751681876897
Negatively correlated3g6649.t1-0.926095481556831

Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora capitata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.readyopen →
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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