Gene detail

Detailed information of g521.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MCH9758355.1, aminomethyltransferase family protein [Pseudomonadota bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5LT52	Trimethylamine-oxide aldolase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=tdm PE=1 SV=2
A7GSN8	Aminomethyltransferase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98) OX=315749 GN=gcvT PE=3 SV=1
A8FF41	Aminomethyltransferase OS=Bacillus pumilus (strain SAFR-032) OX=315750 GN=gcvT PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000002 (this species only)
Orthogroup (gene family)	OG0000077 (this species only)
Orthogroup (gene family)	OG0000235 (this species only)
Orthogroup (gene family)	OG0000323 (this species only)
Orthogroup (gene family)	OG0000349 (this species only)
Orthogroup (gene family)	OG0000858 (this species only)
Orthogroup (gene family)	OG0002971 (this species only)
Orthogroup (gene family)	OG0003325 (this species only)
Orthogroup (gene family)	OG0006287 (this species only)
Orthogroup (gene family)	OG0010275 (this species only)
Orthogroup (gene family)	OG0013261 (this species only)
Orthogroup (gene family)	OG0048237 (this species only)
Orthogroup (gene family)	OG0059754 (this species only)
Orthogroup (gene family)	OG0171071 (this species only)
Orthogroup (gene family)	OG0171291 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028 all species →	Cadherin	Cadherin domain	Domain	Interproscan
PF00077 all species →	RVP	Retroviral aspartyl protease	Domain	Interproscan
PF01066 all species →	CDP-OH_P_transf	CDP-alcohol phosphatidyltransferase	Family	Interproscan
PF00528 all species →	BPD_transp_1	Binding-protein-dependent transport system inner membrane component	Family	Interproscan
PF08669 all species →	GCV_T_C	Glycine cleavage T-protein C-terminal barrel domain	Domain	Interproscan
PF09347 all species →	DUF1989	Domain of unknown function (DUF1989)	Domain	Interproscan
PF01571 all species →	GCV_T	Aminomethyltransferase folate-binding domain	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF07929 all species →	PRiA4_ORF3	Plasmid pRiA4b ORF-3-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002126 all species →	Domain	Cadherin-like	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR020894 all species →	Conserved_site	Cadherin conserved site	Interproscan
IPR050971 all species →	Family	Cadherin domain-containing protein	Interproscan
IPR027397 all species →	Homologous_superfamily	Catenin binding domain superfamily	Interproscan
IPR018061 all species →	Domain	Retropepsins	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR001995 all species →	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR000462 all species →	Family	CDP-alcohol phosphatidyltransferase	Interproscan
IPR043130 all species →	Homologous_superfamily	CDP-alcohol phosphatidyltransferase, transmembrane domain	Interproscan
IPR050324 all species →	Family	CDP-alcohol phosphatidyltransferase class-I	Interproscan
IPR000515 all species →	Domain	ABC transporter type 1, transmembrane domain MetI-like	Interproscan
IPR013977 all species →	Domain	Glycine cleavage T-protein, C-terminal barrel domain	Interproscan
IPR018959 all species →	Domain	Domain of unknown function DUF1989	Interproscan
IPR029043 all species →	Homologous_superfamily	Glycine cleavage T-protein/YgfZ, C-terminal	Interproscan
IPR035906 all species →	Homologous_superfamily	MetI-like superfamily	Interproscan
IPR027266 all species →	Homologous_superfamily	GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1	Interproscan
IPR028896 all species →	Family	Aminomethyltransferase-like	Interproscan
IPR006222 all species →	Domain	Aminomethyltransferase, folate-binding domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR050122 all species →	Family	Receptor Tyrosine Kinase	Interproscan
IPR020635 all species →	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR036849 all species →	Homologous_superfamily	Enolase-like, C-terminal domain superfamily	Interproscan
IPR024047 all species →	Homologous_superfamily	MM3350-like superfamily	Interproscan
IPR012912 all species →	Family	Plasmid pRiA4b, Orf3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24025 all species →	DESMOGLEIN FAMILY MEMBER	Interproscan
PTHR14269 all species →	CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED	Interproscan
PTHR43757 all species →	AMINOMETHYLTRANSFERASE	Interproscan
PTHR24416 all species →	TYROSINE-PROTEIN KINASE RECEPTOR	Interproscan
PTHR22955 all species →	RETROTRANSPOSON	Interproscan
PTHR33332 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR41878 all species →	LEXA REPRESSOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0005911 all species →	Cellular Component	cell-cell junction	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008654 all species →	Biological Process	phospholipid biosynthetic process	Interproscan
GO:0016780 all species →	Molecular Function	phosphotransferase activity, for other substituted phosphate groups	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0032049 all species →	Biological Process	cardiolipin biosynthetic process	Interproscan
GO:0043337 all species →	Molecular Function	cardiolipin synthase (CMP-forming)	Interproscan
GO:0046474 all species →	Biological Process	glycerophospholipid biosynthetic process	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004714 all species →	Molecular Function	transmembrane receptor protein tyrosine kinase activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007169 all species →	Biological Process	cell surface receptor protein tyrosine kinase signaling pathway	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0033674 all species →	Biological Process	positive regulation of kinase activity	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05127	PTK7, CCK4; PTK7 protein tyrosine kinase 7	EC:2.7.10.1	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.