Gene detail

Detailed information of g522.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: NKB63477.1, betaine/proline/choline family ABC transporter ATP-binding protein [Gammaproteobacteria bacterium]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9KIF7	Glycine betaine transport ATP-binding protein OpuAA OS=Lactococcus lactis subsp. lactis (strain IL1403) OX=272623 GN=opuAA PE=3 SV=1
P46920	Glycine betaine transport ATP-binding protein OpuAA OS=Bacillus subtilis (strain 168) OX=224308 GN=opuAA PE=1 SV=3
Q9RR46	Glycine betaine/carnitine transport ATP-binding protein GbuA OS=Listeria monocytogenes serotype 1/2a (strain 10403S) OX=393133 GN=gbuA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000002 (this species only)
Orthogroup (gene family)	OG0000061 (this species only)
Orthogroup (gene family)	OG0000114 (this species only)
Orthogroup (gene family)	OG0000270 (this species only)
Orthogroup (gene family)	OG0000862 (this species only)
Orthogroup (gene family)	OG0001349 (this species only)
Orthogroup (gene family)	OG0001609 (this species only)
Orthogroup (gene family)	OG0003699 (this species only)
Orthogroup (gene family)	OG0006018 (this species only)
Orthogroup (gene family)	OG0006359 (this species only)
Orthogroup (gene family)	OG0006817 (this species only)
Orthogroup (gene family)	OG0008704 (this species only)
Orthogroup (gene family)	OG0027684 (this species only)
Orthogroup (gene family)	OG0173904 (this species only)
Orthogroup (gene family)	OG0174505 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00370 all species →	FGGY_N	FGGY family of carbohydrate kinases, N-terminal domain	Domain	Interproscan
PF02782 all species →	FGGY_C	FGGY family of carbohydrate kinases, C-terminal domain	Domain	Interproscan
PF13384 all species →	HTH_23	Homeodomain-like domain	Domain	Interproscan
PF05216 all species →	UNC-50	UNC-50 family	Family	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13091 all species →	PLDc_2	PLD-like domain	Domain	Interproscan
PF01521 all species →	Fe-S_biosyn	Iron-sulphur cluster biosynthesis	Family	Interproscan
PF04379 all species →	DUF525	ApaG domain	Family	Interproscan
PF09346 all species →	SMI1_KNR4	SMI1 / KNR4 family (SUKH-1)	Domain	Interproscan
PF08241 all species →	Methyltransf_11	Methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR018483 all species →	Conserved_site	Carbohydrate kinase, FGGY, conserved site	Interproscan
IPR018484 all species →	Domain	Carbohydrate kinase FGGY, N-terminal	Interproscan
IPR018485 all species →	Domain	Carbohydrate kinase FGGY, C-terminal	Interproscan
IPR000577 all species →	Family	Carbohydrate kinase, FGGY	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR007881 all species →	Family	UNC-50	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR051022 all species →	Family	Notch Signaling and Cell Fate Determination	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR051921 all species →	Family	ABC transporter osmolyte uptake ATP-binding protein	Interproscan
IPR005892 all species →	Family	Glycine betaine/proline betaine transport system ATP-binding protein ProV-like	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR050122 all species →	Family	Receptor Tyrosine Kinase	Interproscan
IPR020635 all species →	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR001736 all species →	Domain	Phospholipase D/Transphosphatidylase	Interproscan
IPR025202 all species →	Domain	Phospholipase D-like domain	Interproscan
IPR015679 all species →	Family	Phospholipase D family	Interproscan
IPR000361 all species →	Domain	FeS cluster biogenesis	Interproscan
IPR037883 all species →	Homologous_superfamily	Knr4/Smi1-like domain superfamily	Interproscan
IPR007474 all species →	Domain	ApaG domain	Interproscan
IPR036767 all species →	Homologous_superfamily	ApaG domain superfamily	Interproscan
IPR035903 all species →	Homologous_superfamily	HesB-like domain superfamily	Interproscan
IPR018958 all species →	Domain	Knr4/Smi1-like domain	Interproscan
IPR016092 all species →	Family	FeS cluster insertion protein	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR033060 all species →	Family	Integrator complex subunit 7	Interproscan
IPR013216 all species →	Domain	Methyltransferase type 11	Interproscan
IPR051052 all species →	Family	Diverse substrate methyltransferase	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10196 all species →	SUGAR KINASE	Interproscan
PTHR35004 all species →	TRANSPOSASE RV3428C-RELATED	Interproscan
PTHR12841 all species →	PROTEIN UNC-50 HOMOLOG	Interproscan
PTHR24049 all species →	CRUMBS FAMILY MEMBER	Interproscan
PTHR43869 all species →	GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM ATP-BINDING PROTEIN PROV	Interproscan
PTHR24416 all species →	TYROSINE-PROTEIN KINASE RECEPTOR	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR18896 all species →	PHOSPHOLIPASE D	Interproscan
PTHR43011 all species →	IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL	Interproscan
PTHR13322 all species →	C1ORF73 PROTEIN	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR44942 all species →	METHYLTRANSF_11 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006071 all species →	Biological Process	glycerol metabolic process	Interproscan
GO:0006641 all species →	Biological Process	triglyceride metabolic process	Interproscan
GO:0016310 all species →	Biological Process	phosphorylation	Interproscan
GO:0046167 all species →	Biological Process	glycerol-3-phosphate biosynthetic process	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016773 all species →	Molecular Function	phosphotransferase activity, alcohol group as acceptor	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0030173 all species →	Cellular Component	obsolete integral component of Golgi membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007157 all species →	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0032991 all species →	Cellular Component	protein-containing complex	Interproscan
GO:0045197 all species →	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0031460 all species →	Biological Process	glycine betaine transport	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004714 all species →	Molecular Function	transmembrane receptor protein tyrosine kinase activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007169 all species →	Biological Process	cell surface receptor protein tyrosine kinase signaling pathway	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0033674 all species →	Biological Process	positive regulation of kinase activity	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004630 all species →	Molecular Function	phospholipase D activity	Interproscan
GO:0009395 all species →	Biological Process	phospholipid catabolic process	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0060627 all species →	Biological Process	regulation of vesicle-mediated transport	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016226 all species →	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0106035 all species →	Biological Process	protein maturation by [4Fe-4S] cluster transfer	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0016180 all species →	Biological Process	snRNA processing	Interproscan
GO:0032039 all species →	Cellular Component	integrator complex	Interproscan
GO:0034472 all species →	Biological Process	snRNA 3'-end processing	Interproscan
GO:0008757 all species →	Molecular Function	S-adenosylmethionine-dependent methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02000	proV; glycine betaine/proline transport system ATP-binding protein	EC:7.6.2.9	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.