Detailed information of g524.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_263838236.1, D-cysteine desulfhydrase [Vibrio natriegens]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A3SQG3L-cysteate sulfo-lyase OS=Roseovarius nubinhibens (strain ATCC BAA-591 / DSM 15170 / ISM) OX=89187 GN=cuyA PE=1 SV=1
Q5LL69L-cysteate sulfo-lyase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=cuyA PE=1 SV=1
B7LP46D-cysteine desulfhydrase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73) OX=585054 GN=dcyD PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02373JmjCJmjC domain, hydroxylaseDomainInterproscan
PF04991LicDLicD familyDomainInterproscan
PF16076Acyltransf_CAcyltransferase C-terminusFamilyInterproscan
PF01553AcyltransferaseAcyltransferaseFamilyInterproscan
PF00176SNF2-rel_domSNF2-related domainDomainInterproscan
PF18375CDH1_2_SANT_HL1CDH1/2 SANT-Helical linker 1DomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF00385ChromoChromo (CHRromatin Organisation MOdifier) domainDomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF18408zf_HakaiC2H2 Hakai zinc finger domainDomainInterproscan
PF01344Kelch_1Kelch motifRepeatInterproscan
PF00291PALPPyridoxal-phosphate dependent enzymeFamilyInterproscan
PF06808DctMTripartite ATP-independent periplasmic transporter, DctM componentFamilyInterproscan
PF00621RhoGEFRhoGEF domainDomainInterproscan
PF17838PH_16PH domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003347DomainJmjC domainInterproscan
IPR051630FamilyTranscriptional Corepressor and Histone DemethylaseInterproscan
IPR052942FamilyLipopolysaccharide cholinephosphotransferaseInterproscan
IPR007074FamilyLicD familyInterproscan
IPR032098DomainAcyltransferase, C-terminal domainInterproscan
IPR002123DomainPhospholipid/glycerol acyltransferaseInterproscan
IPR049730DomainSNF2/RAD5-like, C-terminal helicase domainInterproscan
IPR038718Homologous_superfamilySNF2-like, N-terminal domain superfamilyInterproscan
IPR000953DomainChromo/chromo shadow domainInterproscan
IPR023779Conserved_siteChromo domain, conserved siteInterproscan
IPR000330DomainSNF2, N-terminalInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR002464Conserved_siteDNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR016197Homologous_superfamilyChromo-like domain superfamilyInterproscan
IPR040793DomainCDH1/2, SANT-Helical linker 1Interproscan
IPR023780DomainChromo domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR040380DomainHAKAI-like, RING finger, HC subclassInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR040383FamilyE3 ubiquitin-protein ligase HAKAI/CBLL2Interproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR041042DomainHakai, C2H2 zinc finger domainInterproscan
IPR015915Homologous_superfamilyKelch-type beta propellerInterproscan
IPR006652RepeatKelch repeat type 1Interproscan
IPR036052Homologous_superfamilyTryptophan synthase beta chain-like, PALP domain superfamilyInterproscan
IPR001926DomainTryptophan synthase beta chain-like, PALP domainInterproscan
IPR010656DomainTRAP C4-dicarboxylate transport system permease DctM subunitInterproscan
IPR027278Family1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydraseInterproscan
IPR005966FamilyD-cysteine desulfhydraseInterproscan
IPR000219DomainDbl homology (DH) domainInterproscan
IPR035899Homologous_superfamilyDbl homology (DH) domain superfamilyInterproscan
IPR001849DomainPleckstrin homology domainInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR041020DomainARHGEF1-like, PH domainInterproscan
IPR051632FamilyRho guanine nucleotide exchange factorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14017LYSINE-SPECIFIC DEMETHYLASEInterproscan
PTHR43404LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICDInterproscan
PTHR109831-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATEDInterproscan
PTHR45623CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATEDInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR13480E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATEDInterproscan
PTHR45632LD33804PInterproscan
PTHR437801-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE-RELATEDInterproscan
PTHR13944AGAP007712-PAInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0031490Molecular Functionchromatin DNA bindingInterproscan
GO:0044666Cellular ComponentMLL3/4 complexInterproscan
GO:0005783Cellular Componentendoplasmic reticulumInterproscan
GO:0012505Cellular Componentendomembrane systemInterproscan
GO:0016746Molecular Functionacyltransferase activityInterproscan
GO:0036149Biological Processphosphatidylinositol acyl-chain remodelingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0140658Molecular FunctionATP-dependent chromatin remodeler activityInterproscan
GO:0000785Cellular ComponentchromatinInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0034728Biological Processnucleosome organizationInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0030155Biological Processregulation of cell adhesionInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0019148Molecular FunctionD-cysteine desulfhydrase activityInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0005085Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0035023Biological Processregulation of Rho protein signal transductionInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13513LCLAT1, AGPAT8; lysocardiolipin and lysophospholipid acyltransferaseEC:2.3.1.-
EC:2.3.1.51
Cysteine and methionine metabolismko00270deepkoala
Membrane traffickingko04131deepkoala
Ubiquitin systemko04121deepkoala
Chromosome and associated proteinsko03036deepkoala
Lipid biosynthesis proteinsko01004deepkoala

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