Detailed information of g525.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MAS04471.1, C4-dicarboxylate ABC transporter [Ahrensia sp.]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q4QP41Sialic acid-binding periplasmic protein SiaP OS=Haemophilus influenzae (strain 86-028NP) OX=281310 GN=siaP PE=3 SV=1
P44542Sialic acid-binding periplasmic protein SiaP OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=siaP PE=1 SV=1
Q128M1Solute-binding protein Bpro_3107 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) OX=296591 GN=Bpro_3107 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity|RBR

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01485IBRIBR domain, a half RING-finger domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF08241Methyltransf_11Methyltransferase domainDomainInterproscan
PF10374EST1Telomerase activating protein Est1RepeatInterproscan
PF13638PIN_4PIN domainDomainInterproscan
PF10373EST1_DNA_bindEst1 DNA/RNA binding domainRepeatInterproscan
PF03480DctPBacterial extracellular solute-binding protein, family 7FamilyInterproscan
PF04153NOT2_3_5_CNOT2/NOT3/NOT5 C-terminalDomainInterproscan
PF00102Y_phosphataseProtein-tyrosine phosphataseDomainInterproscan
PF17771ADAMTS_CR_2ADAMTS cysteine-rich domain 2DomainInterproscan
PF13688Reprolysin_5Metallo-peptidase family M12FamilyInterproscan
PF00090TSP_1Thrombospondin type 1 domainDomainInterproscan
PF19030TSP1_ADAMTSThrombospondin type 1 domainDomainInterproscan
PF05986ADAMTS_spacer1ADAM-TS Spacer 1DomainInterproscan
PF19236ADAMTS_CR_3ADAMTS cysteine-rich domainDomainInterproscan
PF02466Tim17Tim17/Tim22/Tim23/Pmp24 familyFamilyInterproscan
PF00665rveIntegrase core domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002867DomainIBR domainInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR031127FamilyE3 ubiquitin ligase RBR familyInterproscan
IPR044066DomainTRIAD supradomainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR052356FamilyThiol S-methyltransferaseInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR013216DomainMethyltransferase type 11Interproscan
IPR019458DomainTelomerase activating protein Est1-like, N-terminalInterproscan
IPR045153FamilyEst1/Ebs1-likeInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR002716DomainPIN domainInterproscan
IPR018834DomainDNA/RNA-binding domain, Est1-typeInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR038404Homologous_superfamilyTRAP transporter solute receptor DctP superfamilyInterproscan
IPR018389FamilyTRAP transporter solute receptor DctPInterproscan
IPR007282DomainNOT2/NOT3/NOT5, C-terminalInterproscan
IPR038635Homologous_superfamilyCCR4-NOT complex subunit 2/3/5, C-terminal domain superfamilyInterproscan
IPR040168FamilyNot2/Not3/Not5Interproscan
IPR000242DomainTyrosine-specific protein phosphatase, PTPase domainInterproscan
IPR003595DomainProtein-tyrosine phosphatase, catalyticInterproscan
IPR000387DomainTyrosine-specific protein phosphatases domainInterproscan
IPR029021Homologous_superfamilyProtein-tyrosine phosphatase-likeInterproscan
IPR050348FamilyProtein-Tyrosine PhosphataseInterproscan
IPR024079Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR041645DomainADAMTS, cysteine-rich domain 2Interproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR050439FamilyADAMTS and ADAMTS-likeInterproscan
IPR001590DomainPeptidase M12B, ADAM/reprolysinInterproscan
IPR013273FamilyADAMTS/ADAMTS-likeInterproscan
IPR010294DomainADAMTS/ADAMTS-like, Spacer 1Interproscan
IPR045371DomainADAMTS/ADAMTS-like, cysteine-rich domain 3Interproscan
IPR005678FamilyMitochondrial inner membrane translocase complex, subunit Tim17Interproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11685RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAININGInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR45036METHYLTRANSFERASE LIKE 7BInterproscan
PTHR15696SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7Interproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR33376-Interproscan
PTHR23326CCR4 NOT-RELATEDInterproscan
PTHR19134RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASEInterproscan
PTHR13723ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASEInterproscan
PTHR10485MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM-17Interproscan
PTHR37984PROTEIN CBG26694Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0000151Cellular Componentubiquitin ligase complexInterproscan
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0031624Molecular Functionubiquitin conjugating enzyme bindingInterproscan
GO:0032436Biological Processpositive regulation of proteasomal ubiquitin-dependent protein catabolic processInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0008757Molecular FunctionS-adenosylmethionine-dependent methyltransferase activityInterproscan
GO:0000184Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decayInterproscan
GO:0005697Cellular Componenttelomerase holoenzyme complexInterproscan
GO:0042162Molecular Functiontelomeric DNA bindingInterproscan
GO:0070034Molecular Functiontelomerase RNA bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000289Biological Processnuclear-transcribed mRNA poly(A) tail shorteningInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0030015Cellular ComponentCCR4-NOT core complexInterproscan
GO:0004725Molecular Functionprotein tyrosine phosphatase activityInterproscan
GO:0006470Biological Processprotein dephosphorylationInterproscan
GO:0016311Biological ProcessdephosphorylationInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0005744Cellular ComponentTIM23 mitochondrial import inner membrane translocase complexInterproscan
GO:0008320Molecular Functionprotein transmembrane transporter activityInterproscan
GO:0030150Biological Processprotein import into mitochondrial matrixInterproscan
GO:0031305Cellular Componentobsolete integral component of mitochondrial inner membraneInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12580CNOT3, NOT3; CCR4-NOT transcription complex subunit 3-Transportersko02000deepkoala
DNA replication proteinsko03032deepkoala
Transportersko02000deepkoala
Ubiquitin systemko04121deepkoala
Messenger RNA biogenesisko03019deepkoala

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