Gene detail

Detailed information of g526.t1 in Montipora capitata

Genomic Location: Sc0000005:175215...194565
NR annotation: XP_029206496.2, band 3 anion transport protein-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g526.t1

atggctgagacaaggaagatttcctccgcatcgagcaattatggtgtagatctggaagagggtaagccacaaagtagcgtgaagaatgaggaattcagaaaggtcttcgatcggccatttgcagcaccgagaccgtttgaatcgagacctcaaacttcagatgttccaacttcgcactacgactacaatttcgacgagaaagattacaaatctcgccgcatttcatctaccaaatatcatgaacctttacaaagacttcattcacattcccgcaatttaaataaactgggtaaaaatgatgctagcccaaagaaggagaagagacgatctcgagaaatcagagttcttcctaaaatcaatgagggacaagaagcgcataatcactatggtgatgaaaatgaaaaggcacacagagtgacagagtcgttgtttgagaaaaggaagcatcatcatcctcgtcggcatcacagtcatcatagtcgtgaacacaaagataacaaggataaaagagacaaagatattgaagataatgaagggaaaaaacctcatcaccaccatcaccgtcgtcgacatcatcatcatcagttggtggctgctcctcaacagcatagaacaatctcagaaagagagcagctggagtctcgccttcgatctggttcacttacgctacgggaaattgagcctattcatgatagactggcaacagaaaaagatgaggcaagccagttagctaaaagagatttggaagaaatggcatggcatcgctttgaggatttaagagggctcagaaggcgtcgacctcatttaccacggcacaagtctggaatgaaaactcattttagtagcacagacatcagcaagagcctgcagcgatttcctgtcaagtatgatcatagtcctcgtgaggcattcattgagttagaacagttaacaaagaatggggaggaaatggaatggaaggaaactgctcgttggataaagtttgaggagaatgttgaggagtcaaaccgctggggaaaaccccatgtcgcttcattgacatttcatagcctgttagaactacggagaggattagagaaaggcacggtgcttctggacttggaaaagtttgatttaccaagtatagccgaagcggttgttgaaaattttgtgatcacagaccagttgagccaaacagacagtaacaaagtgctggctgcattactgttacggcacagacatcagtatcaaatgacacaaacagtgcctagacgtccctcttcatataatctctgggctatggctagaaaagattccaagtcatcatttcctgcagttgactcagaaaataaaccaattattgttggggacagtgaatgcaacacaacagaagatggaacaattagattgaagattgatgacacgtgtgccaatatctcagaccaagaaattattgaggtgccaagtgatgacaacaaggaggccaagcctggtgtatcatttgctccagaagtggcgatagaagaagctggaggtaaacaagaatctgatgtaaaatcaaagattcctgaaggagcagaagccacaactgtccttgttggaacactagatgaactgcaacattccgtgctggcatttgttcgtctcgccaaaggttgtaatcttaacattactgaggtgtccattcctgtaaggttcttgtttgttttgctgggaccaaactcagaggaagaggcgtatcatgaaattgggcgatctgtggcaactttaatgtctgatcaggcttttcatgatgttgcctatcgtgcagactcgcgggaggacttgttgtcagccatcaatggatttcttgacgacactgttgttttaccgcctggcgagtgggatcgtaatgtgctgttgccgatcctcattgagcagagcagagctatggtacggagaagaaaaatggctaaggctgcccttgcagcagctgctgaagaacaagagcaagatccactagacagaacagggtccttctgtggtggtcttattcaggatgtcaagcgacgtgctaaattttatcttagtgactttaaagatggctttaacatgcagtgcctactgacatcaatctttttgtacttctctgtgttcgcccctaatgttgcttttggcagtattcttgataagaagactgctggttggttaggagtgtcagaagtgatatcggcaacttgtctctgtggcgtattgtttggactttttgcaggacagccattaataataattggagcaactggccctgttctggtgtttgagcagactatttacgagttttgtgctatttatgacctggaattcctgccatggcgatgttggatcggtttctgggttatgataattctttttggtgtagttgctttggagggctgcttcttggtgcgctacttcacacgtttcactgaagaaatatttgcttgtctcatctcagtaatcttcatctatgaagcagttcactttttagaacaggtattcaaagaaaatcctttggcaaagtcttattcagaagctccttgcagtggagagactaaaaagaatggacaaccaaacacagcattgctctcaaccatcttgcttcttggaactttctttgtggctttctatttgcgcaagttcaggacaagttacttctttggaaaaagggcaaggagacttgtaagcgactttggcattgtcattgctatggcatctatgcttattcttgatatgttccttcatgacaaagtcacaacgccaaaggttgctattggagatccatttcacactggctttcatccaacaagacgcagtgaaaggggatggtttattaatcctgctggtatgacaaagccaatgggctctggttggatttttgcagccatagttcctgctctttttgttggcattttgttatttatggaaactgaattaactggtgttcttttgaataagaaagaaaacaagcttaccaaaggtgctgggtttaatttggacttgtgtgtcatgggactattgtcatttatttgttcattaatgggattgccatggatgtgtgctgcaactgttcgttcagtgtctcatttacagtcattaacaatatggagtacatcccatgctccaggtgtaagaccacatattgttgaagtcaaggaacagaggatcacaaacattgccattcatatcctcacggggatttctattctgttagctccagcattaaatcgtattccggttccagtcatgtttggcgtgttgttgtaccttggtgtgagttcattctcaggtatccagctggttgacagatttataatgatgtttatgccacacaagtatcaccctgatgtacagtatgtaaggaaggttaaaactttgaagattcatagttacactggaatccagttaatctgtttagctcttctaattgttgtgaaggtgacagttcttgctccatcatttcctttcttcatcatctgtcttatcccactgcgcaaggttctaataaagttttttgacgaaaacgaacttggagagcttgacaatgaggaaccagctgatgatgacagtgatgtggacgaatacgacagtgtttttcttccctattaa

Transcript

g526.t1

ATGGCTGAGACAAGGAAGATTTCCTCCGCATCGAGCAATTATGGTGTAGATCTGGAAGAGGGTAAGCCACAAAGTAGCGTGAAGAATGAGGAATTCAGAAAGGTCTTCGATCGGCCATTTGCAGCACCGAGACCGTTTGAATCGAGACCTCAAACTTCAGATGTTCCAACTTCGCACTACGACTACAATTTCGACGAGAAAGATTACAAATCTCGCCGCATTTCATCTACCAAATATCATGAACCTTTACAAAGACTTCATTCACATTCCCGCAATTTAAATAAACTGGGTAAAAATGATGCTAGCCCAAAGAAGGAGAAGAGACGATCTCGAGAAATCAGAGTTCTTCCTAAAATCAATGAGGGACAAGAAGCGCATAATCACTATGGTGATGAAAATGAAAAGGCACACAGAGTGACAGAGTCGTTGTTTGAGAAAAGGAAGCATCATCATCCTCGTCGGCATCACAGTCATCATAGTCGTGAACACAAAGATAACAAGGATAAAAGAGACAAAGATATTGAAGATAATGAAGGGAAAAAACCTCATCACCACCATCACCGTCGtcgacatcatcatcatcagttggTGGCTGCTCCTCAACAGCATAGAACAATCTCAGAAAGAGAGCAGCTGGAGTCTCGCCTTCGATCTGGTTCACTTACGCTACGGGAAATTGAGCCTATTCATGATAGACTGGCAACAGAAAAAGATGAGGCAAGCCAGTTAGCTAAAAGAGATTTGGAAGAAATGGCATGGCATCGCTTTGAGGATTTAAGAGGGCTCAGAAGGCGTCGACCTCATTTACCACGGCACAAGTCTGGAATGAAAACTCATTTTAGTAGCACAGACATCAGCAAGAGCCTGCAGCGATTTCCTGTCAAGTATGATCATAGTCCTCGTGAGGCATTCATTGAGTTAGAACAGTTAACAAAGAATGGGGAGGAAATGGAATGGAAGGAAACTGCTCGTTGGATAAAGTTTGAGGAGAATGTTGAGGAGTCAAACCGCTGGGGAAAACCCCATGTCGCTTCATTGACATTTCATAGCCTGTTAGAACTACGGAGAGGATTAGAGAAAGGCACGGTGCTTCTGGACTTGGAAAAGTTTGATTTACCAAGTATAGCCGAAGCGGTTGTTGAAAATTTTGTGATCACAGACCAGTTGAGCCAAACAGACAGTAACAAAGTGCTGGCTGCATTACTGTTACGGCACAGACATCAGTATCAAATGACACAAACAGTGCCTAGACGTCCCTCTTCATATAATCTCTGGGCTATGGCTAGAAAAGATTCCAAGTCATCATTTCCTGCAGTTGACTCAGAAAATAAACCAATTATTGTTGGGGACAGTGAATGCAACACAACAGAAGATGGAACAATTAGATTGAAGATTGATGACACGTGTGCCAATATCTCAGACCAAGAAATTATTGAGGTGCCAAGTGATGACAACAAGGAGGCCAAGCCTGGTGTATCATTTGCTCCAGAAGTGGCGATAGAAGAAGCTGGAGGTAAACAAGAATCTGATGTAAAATCAAAGATTCCTGAAGGAGCAGAAGCCACAACTGTCCTTGTTGGAACACTAGATGAACTGCAACATTCCGTGCTGGCATTTGTTCGTCTCGCCAAAGGTTGTAATCTTAACATTACTGAGGTGTCCATTCCTGTAAGgttcttgtttgttttgctgGGACCAAACTCAGAGGAAGAGGCGTATCATGAAATTGGGCGATCTGTGGCAACTTTAATGTCTGATCAGGCTTTTCATGATGTTGCCTATCGTGCAGACTCGCGGGAGGACTTGTTGTCAGCCATCAATGGATTTCTTGACGACACTGTTGTTTTACCGCCTGGCGAGTGGGATCGTAATGTGCTGTTGCCGATCCTCATTGAGCAGAGCAGAGCTATGGTACGGAGAAGAAAAATGGCTAAGGCTGcccTTGCAGCAGCTGCTGAAGAACAAGAGCAAGATCCACTAGACAGAACAGGGTCCTTCTGTGGTGGTCTTATTCAGGATGTCAAGCGACGTGCTAAATTTTATCTTAGTGACTTTAAAGATGGCTTTAACATGCAGTGCCTACTGACATCAATCTTTTTGTACTTCTCTGTGTTCGCCCCTAATGTTGCTTTTGGCAGTATTCTTGATAAGAAGACTGCTGGTTGGTTAGGAGTGTCAGAAGTGATATCGGCAACTTGTCTCTGTGGCGTATTGTTTGGACTTTTTGCAGGACAGccattaataataattggaGCAACTGGCCCTGTTCTGGTGTTTGAGCAGACTATTTACGAGTTTTGTGCTATTTATGACCTGGAATTCCTGCCATGGCGATGTTGGATCGGTTTCTGGGTTATGATAATTCTTTTTGGTGTAGTTGCTTTGGAGGGCTGCTTCTTGGTGCGCTACTTCACACGTTTCACTGAAGAAATATTTGCTTGTCTCATCTCAGTAATCTTCATCTATGAAGCAGTTCACTTTTTAGAACAGGTATTCAAAGAAAATCCTTTGGCAAAGTCTTATTCAGAAGCTCCTTGCAGTGGAGAGACTAAAAAGAATGGACAACCAAACACAGCATTGCTCTCAACCATCTTGCTTCTTGGAACTTTCTTTGTGGCTTTCTATTTGCGCAAGTTCAGGACAAGTTACTTCTTTGGAAAAAGGGCAAGGAGACTTGTAAGCGACTTTGGCATTGTCATTGCTATGGCATCTATGCTTATTCTTGATATGTTCCTTCATGACAAAGTCACAACGCCAAAGGTTGCTATTGGAGATCCATTTCACACTGGCTTTCATCCAACAAGACGCAGTGAAAGGGGATGGTTTATTAATCCTGCTGGTATGACAAAGCCAATGGGCTCTGGTTGGATTTTTGCAGCCATAGTTCCTGCtctttttgttggcattttgtTATTTATGGAAACTGAATTAACTGGTGTTCTTTTgaataagaaagaaaacaagctTACCAAAGGTGCTGGGTTTAATTTGGACTTGTGTGTCATGGGACTATTGTCATTTATTTGTTCATTAATGGGATTGCCATGGATGTGTGCTGCAACTGTTCGTTCAGTGTCTCATTTACAGTCATTAACAATATGGAGTACATCCCATGCTCCAGGTGTAAGACCACATATTGTTGAAGTCAAGGAACAGAGGATCACAAACATTGCCATTCATATCCTCACGGggATTTCTATTCTGTTAGCTCCAGCATTAAATCGTATTCCGGTTCCAGTCATGTTTGGCGTGTTGTTGTACCTTGGTGTGAGTTCATTCTCAGGTATCCAGCTGGTTGACAGATTTATAATGATGTTTATGCCACACAAGTATCACCCTGATGTACAGTATGTAAGGAAGGTTAAAACTTTGAAGATTCATAGTTACACTGGAATCCAGTTAATCTGTTTAGCTCTTCTAATTGTTGTGAAGGTGACAGTTCTTGCTCCATCATTTCCTTTCTTCATCATCTGTCTTATCCCACTGCGCAAGGTTCTAATAAAGTTTTTTGACGAAAACGAACTTGGAGAGCTTGACAATGAGGAACCAGCTGATGATGACAGTGATGTGGACGAATACGACAGTGTTTTTCTTCCCTATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RD44	Anion exchange protein 2 OS=Pongo abelii OX=9601 GN=SLC4A2 PE=2 SV=2
P23347	Anion exchange protein 2 OS=Rattus norvegicus OX=10116 GN=Slc4a2 PE=1 SV=1
P13808	Anion exchange protein 2 OS=Mus musculus OX=10090 GN=Slc4a2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000857 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07565 all species →	Band_3_cyto	Band 3 cytoplasmic domain	Domain	Interproscan
PF00955 all species →	HCO3_cotransp	HCO3- transporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013769 all species →	Domain	Band 3 cytoplasmic domain	Interproscan
IPR011531 all species →	Domain	Bicarbonate transporter-like, transmembrane domain	Interproscan
IPR003020 all species →	Family	Bicarbonate transporter, eukaryotic	Interproscan
IPR016152 all species →	Homologous_superfamily	Phosphotransferase/anion transporter	Interproscan
IPR001717 all species →	Family	Anion exchange protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11453 all species →	ANION EXCHANGE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006820 all species →	Biological Process	monoatomic anion transport	Interproscan
GO:0008509 all species →	Molecular Function	monoatomic anion transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005452 all species →	Molecular Function	solute:inorganic anion antiporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015701 all species →	Biological Process	bicarbonate transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0050801 all species →	Biological Process	monoatomic ion homeostasis	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g526.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g526.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

137.1Max TPM

54.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	52.67	137.06
whole organisms · low pH treatment	15	15	53.15	93.59
whole organisms · extra low pH treatment pH treatment	12	12	60.25	118.09

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	137.06
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	105.45
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	84.08
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	83.68
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	75.10
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	74.95
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	62.97
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	48.16
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	48.06
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	44.82
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	43.27
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	39.15
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	34.85
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	33.23
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	33.15
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	33.02
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	31.81
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	27.11
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	27.04
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	23.36
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	15.70
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	93.59
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	87.04
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	85.41
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	80.38
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	77.23
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	66.73
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	43.68
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	43.41
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	43.08
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	40.55
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	33.16
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	28.62
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	25.83
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	25.17
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	23.37
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	118.09
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	111.48
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	94.51
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	82.19
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	77.25
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	42.02
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	41.49
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	39.60
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	35.75
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	29.14
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	27.09
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	24.35

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.