Gene detail

Detailed information of g5271.t2 in Acropora digitifera

Genomic Location: chr3Alt:1244455...1256908
NR annotation: XP_044167376.1, lysyl oxidase homolog 3A-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g5271.t2

ATGGCGTACTGGCTATGTTTGCTCGGAGCTGTACTGCTAACGGAAGGCGTTGAAGGGTTCATAGGGGTCCGTCTCATGGGAGGAAAACATCGATTTGAAGGCATAGTTGAAGTTGAACACGGTGGCGAGTGGAGAGGTATCTGTGACCATGGATGGGATAAACACGCTGCTAATGTTGTATGTCGAATGCTGGGATACCCTGGAGCTCTGCGTTATTACAAAGGGCCAAAACCATTCGGTCGTGGAAGCACGTCTTACTGGTTGGATGACATCAGATGCACTGGTGACGAGGAATCTATCAAACAATGTTCTCACAGAGAATGGGGCCAACACAACTGTCTAGCCATCAACCCTGCTTCGGTCAAGTGTGAATTAAATGCGCATGACAAGACAATAACCCCCGAGCCCATAAAGAGCGCCGCTGGTCGGGTTCAAAACGAATTCTTGAATATCGATGTCAGGTTATTGGGTCCCGTTGTGGATGACTTCATCTCCGAGGGTATTGTCCAAATAGCGCTTGCAGGGAGGTGGGGCTATATTTGTCCCTCCAACTGGACACCTGTGAATTCGTACGTTTTGTGTGGTCAGCTTGGATTCCCAGACAGAGAGGTACAGCATTCTTACTCGACGAAGATTCAGGACCTGGCACCCGTGTATTGGCTCGACCAAGTGATGTGTAGAGGATTGGAGTCGTCTATTTTATCATGTGGACATGCTGGATGGGGTAGCTCACAGTGCATGGCTGGTACAGCATTAACGATCAAATGTGTCCGTCGAGGACTGGAAAAGCCACATGGTGTTAGACTTCGAAGTGGGGCGCAGGTCTCTGAGGGACGAGTAGAAATAAAGTTGCGTGATTCCTGGGGGACAATCTGTGATGATCACTGGACCCTGAAAGAGGCAAATGTGGTCTGCAGATCCCTGGGGTACGGGTCAGCGGCAATGGCGACAACTAATGCATATTTTGGAAGAGGAATTGGAAAGATCATGATGGATGATGTTTATTGCGAAGGAAATGAGAAAAGTGTCATGAATTGCCGACATCGCGGATGGCACAAGTCAAACTGTGACCACTATGAAGATGCTGGCGTTATATGTCATGCGCCAAAGCTTCAAGGCCACGAGATAAGGCTTCAAGGTGGCTCCCACCCAAAGGAGGGTCGAGTGGAAGTATTCCATGACAACAAATGGGGATCCATTTGTTCTGATGGCTGGGGGCTGGAGGAAGCCATGACAGTTTGCCGACAGCTTAACCTGGGTTTCGCCAGTGAGGCCGTCATCAATGACAGGTTCCATGGCAGGGACCCTAGAGTAATTATGTCAGGAGTGACGTGTCGCGTTGACGCAATCTCAATTTACAACTGTCAACACGATCCATGGACCAATACCACGTGCAGTAGCAAGGGAAGCTCAGCAGGGGTCGTTTGTGTTGATGAATTACCAGATATTGTTCCAGACACCGAAGTTCTTCAACGCGACATGAAAATAAATTCCATACCTTTGCAATACCTCAGGTGTCCATTGGAGGAAAATTGCCTGTCAGAAACAGCCGACTATGAGATCAGTGACATGACATACTACATGCGTAGACTGTTGAGGTTTAGCGTGAAAACTGATAACGTAGGATTGGCCGATTTTCGTCCAAATGTACCCAGATCCAAGTGGAAATGGCACAAATGTCATAAGCATTATCACTCAATGGAGACCTTTTCTTCATATGACCTCATTAAGCAAGACAGCGGCCAAAAAATTGCTAAGGGCCACAAAGCCAGCTTTTGTTTGGAAGATACCAATTGTTACGAGGGATTTGATAAAAAATTCAACTGCTCCATGGACGGAGGTCAGGGCATATCTCCGGGATGTTATGATCTCTACGGTTGGAGAATCGACTGCCAGTGGGTGGACTGCACGGACTTTACACACGGTGCATTTTATCTGCGAGTGCACATAAATCCAGGAAACAGGGTGGCGGAATCGGATTTCAGAAACAACATTGTAAAATGTCGCGTGTATGACTATGGAAGCTGGATCATAAGCAATTCTTGCGCTATTGAAGAGCTTTCCATTTTGGTGCCCTACCGAGTTTCGAGAGATAGGATTGTGACAGTGGAGTTGACACACATGGCGGCAATTCAAGAGGAAATTGTTGTGAGTTTCCATTCTTTTACAATGGCAAACTATATCACGACTGTACCACAGATGGCTTTATCAAGCGATGGTGCTCAACAACATTCGATTTTAGAAGAGACGGTAAATGGGGGCTTTGCTACGACTAGGGCCAGAGACGAGGCAAAGAGACAAATATCTCAGCATATCATGTAA

Transcript

chr3Alt.g5271.t2

AGCAACAGCCACTCGCGATAGCAAAGGAACACTCGTTTCTTAATTGGCTGCGCTCAGCTGTGTGCGCAGGTTGTGAGATTTGCTCGTCTATTCATTACAAGCGACAGACTGTTGTTTGAAAACAGTGTCTCACCCTAAGGTCCAGACAAATAACGACTGAAATCTGCATTCTATAGCTACCCACTTCAAACAGCAATGTACATAATGGCGTACTGGCTATGTTTGCTCGGAGCTGTACTGCTAACGGAAGGCGTTGAAGGGTTCATAGGGGTCCGTCTCATGGGAGGAAAACATCGATTTGAAGGCATAGTTGAAGTTGAACACGGTGGCGAGTGGAGAGGTATCTGTGACCATGGATGGGATAAACACGCTGCTAATGTTGTATGTCGAATGCTGGGATACCCTGGAGCTCTGCGTTATTACAAAGGGCCAAAACCATTCGGTCGTGGAAGCACGTCTTACTGGTTGGATGACATCAGATGCACTGGTGACGAGGAATCTATCAAACAATGTTCTCACAGAGAATGGGGCCAACACAACTGTCTAGCCATCAACCCTGCTTCGGTCAAGTGTGAATTAAATGCGCATGACAAGACAATAACCCCCGAGCCCATAAAGAGCGCCGCTGGTCGGGTTCAAAACGAATTCTTGAATATCGATGTCAGGTTATTGGGTCCCGTTGTGGATGACTTCATCTCCGAGGGTATTGTCCAAATAGCGCTTGCAGGGAGGTGGGGCTATATTTGTCCCTCCAACTGGACACCTGTGAATTCGTACGTTTTGTGTGGTCAGCTTGGATTCCCAGACAGAGAGGTACAGCATTCTTACTCGACGAAGATTCAGGACCTGGCACCCGTGTATTGGCTCGACCAAGTGATGTGTAGAGGATTGGAGTCGTCTATTTTATCATGTGGACATGCTGGATGGGGTAGCTCACAGTGCATGGCTGGTACAGCATTAACGATCAAATGTGTCCGTCGAGGACTGGAAAAGCCACATGGTGTTAGACTTCGAAGTGGGGCGCAGGTCTCTGAGGGACGAGTAGAAATAAAGTTGCGTGATTCCTGGGGGACAATCTGTGATGATCACTGGACCCTGAAAGAGGCAAATGTGGTCTGCAGATCCCTGGGGTACGGGTCAGCGGCAATGGCGACAACTAATGCATATTTTGGAAGAGGAATTGGAAAGATCATGATGGATGATGTTTATTGCGAAGGAAATGAGAAAAGTGTCATGAATTGCCGACATCGCGGATGGCACAAGTCAAACTGTGACCACTATGAAGATGCTGGCGTTATATGTCATGCGCCAAAGCTTCAAGGCCACGAGATAAGGCTTCAAGGTGGCTCCCACCCAAAGGAGGGTCGAGTGGAAGTATTCCATGACAACAAATGGGGATCCATTTGTTCTGATGGCTGGGGGCTGGAGGAAGCCATGACAGTTTGCCGACAGCTTAACCTGGGTTTCGCCAGTGAGGCCGTCATCAATGACAGGTTCCATGGCAGGGACCCTAGAGTAATTATGTCAGGAGTGACGTGTCGCGTTGACGCAATCTCAATTTACAACTGTCAACACGATCCATGGACCAATACCACGTGCAGTAGCAAGGGAAGCTCAGCAGGGGTCGTTTGTGTTGATGAATTACCAGATATTGTTCCAGACACCGAAGTTCTTCAACGCGACATGAAAATAAATTCCATACCTTTGCAATACCTCAGGTGTCCATTGGAGGAAAATTGCCTGTCAGAAACAGCCGACTATGAGATCAGTGACATGACATACTACATGCGTAGACTGTTGAGGTTTAGCGTGAAAACTGATAACGTAGGATTGGCCGATTTTCGTCCAAATGTACCCAGATCCAAGTGGAAATGGCACAAATGTCATAAGCATTATCACTCAATGGAGACCTTTTCTTCATATGACCTCATTAAGCAAGACAGCGGCCAAAAAATTGCTAAGGGCCACAAAGCCAGCTTTTGTTTGGAAGATACCAATTGTTACGAGGGATTTGATAAAAAATTCAACTGCTCCATGGACGGAGGTCAGGGCATATCTCCGGGATGTTATGATCTCTACGGTTGGAGAATCGACTGCCAGTGGGTGGACTGCACGGACTTTACACACGGTGCATTTTATCTGCGAGTGCACATAAATCCAGGAAACAGGGTGGCGGAATCGGATTTCAGAAACAACATTGTAAAATGTCGCGTGTATGACTATGGAAGCTGGATCATAAGCAATTCTTGCGCTATTGAAGAGCTTTCCATTTTGGTGCCCTACCGAGTTTCGAGAGATAGGATTGTGACAGTGGAGTTGACACACATGGCGGCAATTCAAGAGGAAATTGTTGTGAGTTTCCATTCTTTTACAATGGCAAACTATATCACGACTGTACCACAGATGGCTTTATCAAGCGATGGTGCTCAACAACATTCGATTTTAGAAGAGACGGTAAATGGGGGCTTTGCTACGACTAGGGCCAGAGACGAGGCAAAGAGACAAATATCTCAGCATATCATGTAATATCGCCTAGCGCAGTGCGAAAACAGGGAAGAAAAGTACTGGGAAAGAAGCACCTAGAGAAAGACGGACAACAAGCCATACGGACCCTTGGATTGTTGAAACATAAAGAAACTATTATACTGGCCCCTATTACTCTGAACACCATCGGCTGACCACTTAATTTTAGTAGTTTAAATAAAGGCCGGAATTCTGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P58022	Lysyl oxidase homolog 2 OS=Mus musculus OX=10090 GN=Loxl2 PE=1 SV=2
F1RD85	Lysyl oxidase homolog 3A OS=Danio rerio OX=7955 GN=loxl3a PE=2 SV=1
B5DF27	Lysyl oxidase homolog 2 OS=Rattus norvegicus OX=10116 GN=Loxl2 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00530 all species →	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan
PF01186 all species →	Lysyl_oxidase	Lysyl oxidase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019828 all species →	Conserved_site	Lysyl oxidase, conserved site	Interproscan
IPR036772 all species →	Homologous_superfamily	SRCR-like domain superfamily	Interproscan
IPR001695 all species →	Family	Lysyl oxidase	Interproscan
IPR017448 all species →	Domain	SRCR-like domain	Interproscan
IPR001190 all species →	Domain	SRCR domain	Interproscan
IPR050912 all species →	Family	Lysyl oxidase-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45817 all species →	LYSYL OXIDASE-LIKE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan
GO:0016641 all species →	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004720 all species →	Molecular Function	protein-lysine 6-oxidase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0018057 all species →	Biological Process	peptidyl-lysine oxidation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g5271.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.