Gene detail

Detailed information of g528.t1 in Acropora digitifera

Genomic Location: chr1Alt:7250159...7258521
NR annotation: XP_029214172.2, ubiquitin-associated domain-containing protein 2-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NBM4	Ubiquitin-associated domain-containing protein 2 OS=Homo sapiens OX=9606 GN=UBAC2 PE=1 SV=1
Q4R910	Ubiquitin-associated domain-containing protein 2 OS=Macaca fascicularis OX=9541 GN=UBAC2 PE=2 SV=1
Q8R1K1	Ubiquitin-associated domain-containing protein 2 OS=Mus musculus OX=10090 GN=Ubac2 PE=1 SV=1

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Alpha-Helix\|UBA · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01694 all species →	Rhomboid	Rhomboid family	Family	Interproscan
PF00627 all species →	UBA	UBA/TS-N domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035952 all species →	Homologous_superfamily	Rhomboid-like superfamily	Interproscan
IPR022764 all species →	Domain	Peptidase S54, rhomboid domain	Interproscan
IPR015940 all species →	Domain	Ubiquitin-associated domain	Interproscan
IPR041928 all species →	Domain	UBAC2, UBA domain	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43066 all species →	RHOMBOID-RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25216	UBAC2; ubiquitin-associated domain-containing protein 2	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g528.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

62.5Max TPM

47.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	47.78	62.47

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	62.47
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	59.56
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	58.84
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	56.97
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	54.23
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	53.43
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	52.03
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	51.64
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	50.35
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	50.12
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	50.12
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	49.66
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	49.28
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	48.79
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	48.39
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	47.85
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	47.75
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	47.44
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	47.40
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	47.29
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	47.21
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	46.65
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	45.71
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	45.27
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	45.24
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	45.04
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	44.50
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	44.36
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	44.19
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	44.01
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	43.84
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	43.30
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	42.61
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	42.20
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	41.66
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	41.48
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	41.36
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	40.69
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	40.50

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.