Gene detail

Detailed information of g528.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MCL4122302.1, hypothetical protein [Idotea baltica]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0TJM0	Glutathione import ATP-binding protein GsiA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) OX=362663 GN=gsiA PE=3 SV=2
Q1RE96	Glutathione import ATP-binding protein GsiA OS=Escherichia coli (strain UTI89 / UPEC) OX=364106 GN=gsiA PE=3 SV=2
Q8FJL0	Glutathione import ATP-binding protein GsiA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=gsiA PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000005 (this species only)
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000643 (this species only)
Orthogroup (gene family)	OG0001724 (this species only)
Orthogroup (gene family)	OG0002799 (this species only)
Orthogroup (gene family)	OG0003021 (this species only)
Orthogroup (gene family)	OG0003306 (this species only)
Orthogroup (gene family)	OG0008737 (this species only)
Orthogroup (gene family)	OG0008811 (this species only)
Orthogroup (gene family)	OG0009449 (this species only)
Orthogroup (gene family)	OG0009722 (this species only)
Orthogroup (gene family)	OG0019886 (this species only)
Orthogroup (gene family)	OG0080481 (this species only)
Orthogroup (gene family)	OG0171138 (this species only)
Orthogroup (gene family)	OG0174217 (this species only)
Ubiquitin family	E2\|UBC\|UBC · all ubiquitin genes in this species
Ubiquitin family	UBD\|UBC-like\|UBC · all ubiquitin genes in this species
Ubiquitin family	E2\|UEV\|UEV · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08352 all species →	oligo_HPY	Oligopeptide/dipeptide transporter, C-terminal region	Family	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF09793 all species →	AD	Anticodon-binding domain	Domain	Interproscan
PF21166 all species →	LSM12_LSM	LSM12, LSM domain	Domain	Interproscan
PF08592 all species →	Anthrone_oxy	Anthrone oxygenase	Family	Interproscan
PF00179 all species →	UQ_con	Ubiquitin-conjugating enzyme	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF00878 all species →	CIMR	Cation-independent mannose-6-phosphate receptor repeat	Family	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF05427 all species →	FIBP	Acidic fibroblast growth factor binding (FIBP)	Family	Interproscan
PF00567 all species →	TUDOR	Tudor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050388 all species →	Family	ABC Transporter, Nickel and Peptide Import	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR013563 all species →	Domain	Oligopeptide/dipeptide ABC transporter, C-terminal	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR019181 all species →	Domain	LSM12, anticodon-binding domain	Interproscan
IPR048478 all species →	Domain	LSM12, LSM domain	Interproscan
IPR047574 all species →	Domain	AD domain	Interproscan
IPR039683 all species →	Family	Protein Lsm12-like	Interproscan
IPR036716 all species →	Homologous_superfamily	Pesticidal crystal protein, N-terminal domain superfamily	Interproscan
IPR013901 all species →	Family	Anthrone oxygenase	Interproscan
IPR016135 all species →	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR023313 all species →	Active_site	Ubiquitin-conjugating enzyme, active site	Interproscan
IPR000608 all species →	Domain	Ubiquitin-conjugating enzyme E2	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR044865 all species →	Domain	MRH domain	Interproscan
IPR009011 all species →	Homologous_superfamily	Mannose-6-phosphate receptor binding domain superfamily	Interproscan
IPR000479 all species →	Repeat	Cation-independent mannose-6-phosphate receptor repeat	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR008614 all species →	Family	Acidic fibroblast growth factor intracellular-binding protein	Interproscan
IPR035437 all species →	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR007502 all species →	Domain	Helicase-associated domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43297 all species →	OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD	Interproscan
PTHR13542 all species →	LSM12 HOMOLOG	Interproscan
PTHR36535 all species →	YALI0E30327P	Interproscan
PTHR24068 all species →	UBIQUITIN-CONJUGATING ENZYME E2	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR24238 all species →	G-PROTEIN COUPLED RECEPTOR	Interproscan
PTHR18871 all species →	CENTROSOMAL PROTEIN OF 112 KDA	Interproscan
PTHR18934 all species →	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0015833 all species →	Biological Process	peptide transport	Interproscan
GO:0090729 all species →	Molecular Function	toxin activity	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0061631 all species →	Molecular Function	ubiquitin conjugating enzyme activity	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007218 all species →	Biological Process	neuropeptide signaling pathway	Interproscan
GO:0008188 all species →	Molecular Function	neuropeptide receptor activity	Interproscan
GO:0005537 all species →	Molecular Function	D-mannose binding	Interproscan
GO:0007041 all species →	Biological Process	lysosomal transport	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005622 all species →	Cellular Component	intracellular anatomical structure	Interproscan
GO:0010529 all species →	Biological Process	obsolete negative regulation of transposition	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06689	UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D	EC:2.3.2.23	Ubiquitin system	ko04121	deepkoala
K23643	LSM12; protein LSM12	-	Circadian rhythm - fly	ko04711	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.