Gene detail

Detailed information of g528.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MCL4122302.1, hypothetical protein [Idotea baltica]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q0TJM0	Glutathione import ATP-binding protein GsiA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) OX=362663 GN=gsiA PE=3 SV=2
Q1RE96	Glutathione import ATP-binding protein GsiA OS=Escherichia coli (strain UTI89 / UPEC) OX=364106 GN=gsiA PE=3 SV=2
Q8FJL0	Glutathione import ATP-binding protein GsiA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=gsiA PE=3 SV=2

Gene family	Subfamily
Ubiquitin Family	E2\|UBC\|UBC
Ubiquitin Family	UBD\|UBC-like\|UBC
Ubiquitin Family	E2\|UEV\|UEV

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08352	oligo_HPY	Oligopeptide/dipeptide transporter, C-terminal region	Family	Interproscan
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF09793	AD	Anticodon-binding domain	Domain	Interproscan
PF21166	LSM12_LSM	LSM12, LSM domain	Domain	Interproscan
PF08592	Anthrone_oxy	Anthrone oxygenase	Family	Interproscan
PF00179	UQ_con	Ubiquitin-conjugating enzyme	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF00878	CIMR	Cation-independent mannose-6-phosphate receptor repeat	Family	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF05427	FIBP	Acidic fibroblast growth factor binding (FIBP)	Family	Interproscan
PF00567	TUDOR	Tudor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050388	Family	ABC Transporter, Nickel and Peptide Import	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR013563	Domain	Oligopeptide/dipeptide ABC transporter, C-terminal	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR019181	Domain	LSM12, anticodon-binding domain	Interproscan
IPR048478	Domain	LSM12, LSM domain	Interproscan
IPR047574	Domain	AD domain	Interproscan
IPR039683	Family	Protein Lsm12-like	Interproscan
IPR036716	Homologous_superfamily	Pesticidal crystal protein, N-terminal domain superfamily	Interproscan
IPR013901	Family	Anthrone oxygenase	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR023313	Active_site	Ubiquitin-conjugating enzyme, active site	Interproscan
IPR000608	Domain	Ubiquitin-conjugating enzyme E2	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR044865	Domain	MRH domain	Interproscan
IPR009011	Homologous_superfamily	Mannose-6-phosphate receptor binding domain superfamily	Interproscan
IPR000479	Repeat	Cation-independent mannose-6-phosphate receptor repeat	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR002999	Domain	Tudor domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR008614	Family	Acidic fibroblast growth factor intracellular-binding protein	Interproscan
IPR035437	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR007502	Domain	Helicase-associated domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43297	OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD	Interproscan
PTHR13542	LSM12 HOMOLOG	Interproscan
PTHR36535	YALI0E30327P	Interproscan
PTHR24068	UBIQUITIN-CONJUGATING ENZYME E2	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR24238	G-PROTEIN COUPLED RECEPTOR	Interproscan
PTHR18871	CENTROSOMAL PROTEIN OF 112 KDA	Interproscan
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0015833	Biological Process	peptide transport	Interproscan
GO:0090729	Molecular Function	toxin activity	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0061631	Molecular Function	ubiquitin conjugating enzyme activity	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0007218	Biological Process	neuropeptide signaling pathway	Interproscan
GO:0008188	Molecular Function	neuropeptide receptor activity	Interproscan
GO:0005537	Molecular Function	D-mannose binding	Interproscan
GO:0007041	Biological Process	lysosomal transport	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0010529	Biological Process	obsolete negative regulation of transposition	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23643	LSM12; protein LSM12	-	Ubiquitin system	ko04121	deepkoala
K23643	LSM12; protein LSM12	-	Circadian rhythm - fly	ko04711	deepkoala