Gene detail

Detailed information of g53.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_012556964.2, serine/arginine repetitive matrix protein 1 isoform X1 [Hydra vulgaris]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZMJ9	Serine/arginine repetitive matrix protein 1 OS=Gallus gallus OX=9031 GN=SRRM1 PE=2 SV=1
Q8IYB3	Serine/arginine repetitive matrix protein 1 OS=Homo sapiens OX=9606 GN=SRRM1 PE=1 SV=2
Q5R5Q2	Serine/arginine repetitive matrix protein 1 OS=Pongo abelii OX=9601 GN=SRRM1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000005 (this species only)
Orthogroup (gene family)	OG0000114 (this species only)
Orthogroup (gene family)	OG0000411 (this species only)
Orthogroup (gene family)	OG0000965 (this species only)
Orthogroup (gene family)	OG0001244 (this species only)
Orthogroup (gene family)	OG0001370 (this species only)
Orthogroup (gene family)	OG0001871 (this species only)
Orthogroup (gene family)	OG0004311 (this species only)
Orthogroup (gene family)	OG0005959 (this species only)
Orthogroup (gene family)	OG0006588 (this species only)
Orthogroup (gene family)	OG0009714 (this species only)
Orthogroup (gene family)	OG0012040 (this species only)
Orthogroup (gene family)	OG0014419 (this species only)
Orthogroup (gene family)	OG0027653 (this species only)
Orthogroup (gene family)	OG0172444 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071 all species →	Ras	Ras family	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF02140 all species →	Gal_Lectin	Galactose binding lectin domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF02121 all species →	IP_trans	Phosphatidylinositol transfer protein	Family	Interproscan
PF13843 all species →	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF13472 all species →	Lipase_GDSL_2	GDSL-like Lipase/Acylhydrolase family	Domain	Interproscan
PF01480 all species →	PWI	PWI domain	Family	Interproscan
PF16275 all species →	SF1-HH	Splicing factor 1 helix-hairpin domain	Domain	Interproscan
PF12874 all species →	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR051226 all species →	Family	Protein Phosphatase 1 Regulatory Subunit	Interproscan
IPR043159 all species →	Homologous_superfamily	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Interproscan
IPR000922 all species →	Domain	D-galactoside/L-rhamnose binding SUEL lectin domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001666 all species →	Family	Phosphatidylinositol transfer protein	Interproscan
IPR023393 all species →	Homologous_superfamily	START-like domain superfamily	Interproscan
IPR029526 all species →	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR036483 all species →	Homologous_superfamily	PWI domain superfamily	Interproscan
IPR036514 all species →	Homologous_superfamily	SGNH hydrolase superfamily	Interproscan
IPR052225 all species →	Family	Serine/arginine repetitive matrix	Interproscan
IPR013830 all species →	Domain	SGNH hydrolase-type esterase domain	Interproscan
IPR002483 all species →	Domain	PWI domain	Interproscan
IPR032570 all species →	Domain	Splicing factor 1, helix-hairpin domain	Interproscan
IPR047086 all species →	Homologous_superfamily	Splicing factor 1, helix-hairpin domain superfamily	Interproscan
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR045071 all species →	Family	KH domain-containing BBP-like	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47978 all species →	-	Interproscan
PTHR24179 all species →	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12	Interproscan
PTHR16148 all species →	NF-KAPPA-B-REPRESSING FACTOR-RELATED	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR10658 all species →	PHOSPHATIDYLINOSITOL TRANSFER PROTEIN	Interproscan
PTHR47272 all species →	DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR19446 all species →	REVERSE TRANSCRIPTASES	Interproscan
PTHR23148 all species →	SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN	Interproscan
PTHR11208 all species →	RNA-BINDING PROTEIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004857 all species →	Molecular Function	enzyme inhibitor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019208 all species →	Molecular Function	phosphatase regulator activity	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0005548 all species →	Molecular Function	phospholipid transporter activity	Interproscan
GO:0008526 all species →	Molecular Function	phosphatidylinositol transfer activity	Interproscan
GO:0015914 all species →	Biological Process	phospholipid transport	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0048024 all species →	Biological Process	regulation of mRNA splicing, via spliceosome	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03938	NDUFS5; NADH dehydrogenase (ubiquinone) Fe-S protein 5	-	Non-alcoholic fatty liver disease	ko04932	deepkoala
K07888	RAB5B; Ras-related protein Rab-5B	-	GTP-binding proteins	ko04031	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.