Gene detail

Detailed information of g532.t1 in Montipora capitata

Genomic Location: Sc0000005:246764...258443
NR annotation: XP_029206541.1, anion exchange protein 2-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g532.t1

atggttaaaggagacagaacactggatcgaagacgaagtcagggttttcagttgccaacaatgactgacagccagagtacaacagttaataattcaattgacagcagagatgtccctcatatgtatgaaacagttgacatgccaactgtcgaagaatgtcgtattcgggcagcccagggacagcatacagatggtaaagagaaactccataattctcaccatcacagaacaaaacatgaaagagaacaatttgaagacagagtgagaacagggcaagtgacacagaaggacattgaaactctccatgaacgactgaccttggaaaaaggagaaaagaatgttttgggggacttagatccagcagatattgatattgatgtgacagggcgaaaaactggtggtgctccacggaaagcttcaggaatgcaaacccttttaaggactacagcatatgaccgaaaaccacatgaggcatttgttgaattggaggaactaacaaagaatggaggacaaatggaatggaaggagactgctcgctggatcaagtttgaagaaaacgttgaggattcaaatcgttggggaaagccacatgttgcctcactgacctttcacagtttgcttgagctcaaaaaaggactagaaaaaggtacagtgctgctggaccttgagaggtttgatttgcaaagcattgcacaggccgttgttgaaaacatggtgttgacggaccagctgaaacaagaggacagtgcaaaagttctaacagcactacttctgcaacacagacatcaacatcaacaacaacaacaaaatcaacagtctggcattatgcgtcgtctatcttccaagaaacgcagaaagattgttgttggatctgacaatgtaggctacaatggtgaaagtgaaggaatagggaatggaaatattcgccttaaaacagatggctcaaaagacatgcagaaggacccacatagaatggaggctgcattagatgagcaagaatcagatataaaatgcagaatcccagagggtgcagaagcgacaaatgtgcttgttggcacactagatgatctggaagattctgtgctggcatttgtacgtttggccaaaggttgtaatctggcacaggtctcagaagtgtcaataccagtcaggttcttatttgtcatgttaggtccaagcgaaaataaagaatcataccaccagattggtcgctcaattgcaactttgatgtcagatcaggcttttcatgatgttgcctacagggcagattcacgtgaggatctcttaacagcaataaatgagtttcttgaggacacagttgtattgcctccaggaaattgggatcgtaatgtgctgttacccatactgattgctcagagcagagccattgcactaaggagaaagatggccaaagctgcaacctccagccactcagaaggagacactgccttgctacggacaggcactttctttggagggctgtttcaggacatcaagcgacgtggcaagttctacctcagtgatttcagagatggtttcaatctgcacagcctttttgcctctctctttctttactttgccctgtttgccacaaacattgcatttggtggtctgctggaagacaaaacagagggctggctgggactgactgaggtgattgtatcagcttctgctggtagcatcatcctaggactctttgctggacaacccatgatgataattggtgcaactggtcctatactggtctttgaacagagtatatatgatttttgtaagagttatgatgtggagtttcttacctggcgatgctggatcggcttttgggtcatgattatcttgtttggtgtggttgcattggagggctgttttctcatcaaatacttcactcgcttcactgaagacatctttgagctcctcatatctgcaatcttcatctatgaaccaattgctctgctcatcaagttgtacaagaagaatcctctaggtcgcggcgattcaacgaaatcttcagatggatcagatggtaaacttgaaggtgaaccgaacactgcattgctttcaacaatcttggttctgggaactttttttgtggctttctacatgcgcaagttcaggacaagtcacttttttggaaaaaggtcaagaagactggtcagtgattctagtgtggtcgtagccattttcttaatggctgttttagacttcgctctgggagacaaagtcatcacaccacatgtttccatcaacaatccgttgaccgatggcttccatccaacacatcctgaccgtgattggtttatcaaccctggaggaatgaaaacaagcatgtcaatgggttggatctttgcagcaatcatacccgccatctttgttggaattctgttgttcatggaaactgaaatgacgggcgttctcctgagcaagaaggagcataaacttcagaaggggcctgggtacaatctggatctggttgtagttggggtattgtcatttgggtgttcgttaatgggattaccatggatgtgtgccgatacagtacgttctgcatctcatgtcaatgcactgtccatatggagcacatcacatgcgcctggggagaaaccgcacattattgaagtgaaagaacagagaatcacaaacattctcattcatattttgacaggtctgtccattttgcttgcgccaggtcttgatctcattcctattccagtgttctttggtgttctcctgtatcttggggtctgctcaatgtacggtctgcagatgacggccagatctgtcatgatgttcatgccttcaaaacatcatcctgatataggatatgtcagaaaggtaaggaccagcaagattcactgctatacaattattcaaatccttgccttggcattcctggtagctgtgaagttaacctctcttgctccgtcgttccctttcttcatcatgtgtctcattcccttgcgtaagcttttggcaaagttctacaccgaagaggaacttgaggagcttgacaattcagagtctgaagaagaagacagtgatttcgaactgtaa

Transcript

g532.t1

ATGGTTAAAGGAGACAGAACACTGGATCGAAGACGAAGTCAGGGTTTTCAGTTGCCAACAATGACTGACAGCCAGAGTACAACAGTTAATAATTCAATTGACAGCAGAGATGTCCCTCATATGTATGAAACAGTTGACATGCCAACTGTCGAAGAATGTCGTATTCGGGCAGCCCAGGGACAGCATACAGATGGTAAAGAGAAACTCCATAATTCTCACCATCACAGAACAAAACATGAAAGAGAACAATTTGAAGACAGAGTGAGAACAGGGCAAGTGACACAGAAGGACATTGAAACTCTCCATGAACGACTGACCttggaaaaaggagaaaagaatgTTTTGGGGGACTTAGATCCAGCAGATATTGATATTGATGTGAcagGGCGAAAAACTGGTGGTGCTCCACGGAAAGCTTCAGGAATGCAAACCCTTTTAAGGACTACAGCATATGACCGAAAACCACATGAGGCATTTGTTGAATTGGAGGAACTAACAAAGAATGGAGGACAAATGGAATGGAAGGAGACTGCTCGCTGGATCAAGTTTGAAGAAAACGTTGAGGATTCAAATCGTTGGGGAAAGCCACATGTTGCCTCACTGACCTTTCACAGTTTGCTTGAGCTCAAAAAAGGACTAGAAAAAGGTACAGTGCTGCTGGACCTTGAGAGGTTTGATTTGCAAAGCATTGCACAGGCCGTTGTTGAAAACATGGTGTTGACGGACCAGCTGAAACAAGAGGACAGTGCAAAAGTTCTAACAGCACTACTTCTGCAACACAGAcatcaacatcaacaacaacaacaaaatcaacAGTCTGGCATTATGCGTCGTCTATCTTCCAAGAAACGCAGAAAGATTGTTGTTGGATCTGACAATGTAGGCTACAATGGTGAAAGTGAAGGAATAGGGAATGGAAATATTCGCCTTAAAACAGATGGCTCAAAAGACATGCAGAAGGACCCACATAGAATGGAGGCTGCATTAGATGAGCAAGAATCAGATATAAAATGCAGAATCCCAGAGGGTGCAGAAGCGACAAATGTGCTTGTTGGCACACTAGATGATCTGGAAGATTCTGTGCTGGCATTTGTACGTTTGGCCAAAGGTTGTAATCTGGCACAGGTCTCAGAAGTGTCAATACCAGTCAGGTTCTTATTTGTCATGTTAGGTCCAAGCGAAAATAAAGAATCATACCACCAGATTGGTCGCTCAATTGCAACTTTGATGTCAGATCAGgctTTTCATGATGTTGCCTACAGGGCAGATTCACGTGAGGATCTCTTAACAGCAATAAATGAGTTTCTTGAGGACACAGTTGTATTGCCTCCAGGAAATTGGGATCGTAATGTGCTGTTACCCATACTGATTGCTCAGAGCAGAGCCATTGCACTAAGGAGAAAGATGGCCAAAGCTGCAACCTCCAGCCACTCAGAAGGAGACACTGCCTTGCTACGGACAGGCACTTTCTTTGGAGGGCTGTTTCAGGACATCAAGCGACGTGGCAAGTTCTACCTCAGTGATTTCAGAGATGGTTTCAATCTGCACAGCCTTTTTGCCTCTCTCTTTCTTTACTTTGCCCTGTTTGCCACAAACATTGCATTTGGTGGTCTGCTGGAAGACAAAACAGAGGGCTGGCTGGGACTGACTGAGGTGATTGTATCAGCTTCTGCTGGTAGCATCATCCTAGGACTCTTTGCTGGACAACCCATGATGATAATTGGTGCAACTGGTCCTATACTGGTCTTTGAACAGAGTATATATGATTTTTGTAAGAGTTATGATGTGGAGTTTCTTACCTGGCGATGCTGGATCGGCTTTTGGGTCATGATTATCTTGTTTGGTGTGGTTGCATTGGAGGGCTGTTTTCTCATCAAATACTTCACTCGCTTCACTGAAGACATCTTTGAGCTCCTCATATCTGCAATCTTCATCTATGAACCAATTGCTCTGCTCATCAAGTTGTACAAGAAGAATCCTCTAGGTCGCGGCGATTCAACGAAATCTTCAGATGGATCAGATGGTAAACTTGAAGGTGAACCGAACACTGCATTGCTTTCAACAATCTTGGTTCTGGGAACTTTTTTTGTGGCTTTCTACATGCGCAAGTTCAGGACAAGTCACTTTTTTGGAAAAAGGtcaAGAAGACTGGTCAGTGATTCTAGTGTGGTCGTAGCCATTTTCTTAATGGCTGTTTTAGACTTCGCTCTGGGAGACAAAGTCATCACACCACATGTTTCCATCAACAATCCGTTGACCGATGGCTTCCATCCAACACATCCTGACCGTGATTGGTTTATCAACCCTGGAGGAATGAAAACAAGCATGTCAATGGGTTGGATCTTTGCAGCAATCATACCCGCCATCTTTGTTGGAATTCTGTTGTTCATGGAAACTGAAATGACGGGCGTTCTCCTGAGCAAGAAGGAGCATAAACTTCAGAAGGGGCCTGGGTACAATCTGGATCTGGTTGTAGTTGGGGTATTGTCATTTGGGTGTTCGTTAATGGGATTACCATGGATGTGTGCCGATACAGTACGTTCTGCATCTCATGTCAATGCACTGTCCATATGGAGCACATCACATGCGCCTGGGGAGAAACCGCACATTATTGAAGTGAAAGAACAGAGAATCACAAACATTCTCATTCATATTTTGACAGGTCTGTCCATTTTGCTTGCGCCAGGTCTTGATCTCATTCCTATTCCAGTGTTCTTTGGTGTTCTCCTGTATCTTGGGGTCTGCTCAATGTACGGTCTGCAGATGACGGCCAGATCTGTCATGATGTTCATGCCTTCAAAACATCATCCTGATATAGGATATGTCAGAAAGGTAAGGACCAGCAAGATTCACTGCTATACAATTATTCAAATCCTTGCCTTGGCATTCCTGGTAGCTGTGAAGTTAACCTCTCTTGCTCCGTCGTTCCCTTTCTTCATCATGTGTCTCATTCCCTTGCGTAAGCTTTTGGCAAAGTTCTACACCGAAGAGGAACTTGAGGAGCTTGACAATTCAGAGTCTGAAGAAGAAGACAGTGATTTCGAACTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6SJP2	Anion exchange protein 2 OS=Equus caballus OX=9796 GN=SLC4A2 PE=2 SV=1
P23347	Anion exchange protein 2 OS=Rattus norvegicus OX=10116 GN=Slc4a2 PE=1 SV=1
P13808	Anion exchange protein 2 OS=Mus musculus OX=10090 GN=Slc4a2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000860 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07565 all species →	Band_3_cyto	Band 3 cytoplasmic domain	Domain	Interproscan
PF00955 all species →	HCO3_cotransp	HCO3- transporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016152 all species →	Homologous_superfamily	Phosphotransferase/anion transporter	Interproscan
IPR001717 all species →	Family	Anion exchange protein	Interproscan
IPR003020 all species →	Family	Bicarbonate transporter, eukaryotic	Interproscan
IPR013769 all species →	Domain	Band 3 cytoplasmic domain	Interproscan
IPR011531 all species →	Domain	Bicarbonate transporter-like, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11453 all species →	ANION EXCHANGE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005452 all species →	Molecular Function	solute:inorganic anion antiporter activity	Interproscan
GO:0006820 all species →	Biological Process	monoatomic anion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015701 all species →	Biological Process	bicarbonate transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0050801 all species →	Biological Process	monoatomic ion homeostasis	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0008509 all species →	Molecular Function	monoatomic anion transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13855	SLC4A2, AE2; solute carrier family 4 (anion exchanger), member 2	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g532.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

32TPM > 0

3Conditions

1.5Max TPM

0.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	15	0.50	1.42
whole organisms · low pH treatment	15	10	0.43	1.46
whole organisms · extra low pH treatment pH treatment	12	7	0.31	1.28

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	1.42
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	1.37
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	1.11
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	1.05
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	0.87
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	0.84
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	0.79
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	0.69
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	0.68
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	0.52
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	0.42
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	0.28
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	0.27
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	0.22
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	0.06
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	0.00
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	0.00
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	0.00
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	0.00
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	0.00
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	0.00
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	1.46
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	1.05
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	0.64
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	0.63
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	0.63
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	0.60
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	0.48
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	0.45
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	0.32
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	0.26
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	0.00
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	0.00
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	0.00
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	0.00
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	0.00
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	1.28
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	1.07
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	0.43
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	0.42
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	0.23
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	0.23
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	0.11
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	0.00
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	0.00
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	0.00
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	0.00
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.