Gene detail

Detailed information of g5330.t1 in Tripedalia maipoensis

Genomic Location: scaffold_2:20435332...20472709
NR annotation: no NCBI-NR hit recorded
Species abbreviation TMAIP · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06732 all species →	Pescadillo_N	Pescadillo N-terminus	Family	Interproscan
PF16589 all species →	BRCT_2	BRCT domain, a BRCA1 C-terminus domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR010613 all species →	Family	Pescadillo	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12221 all species →	PESCADILLO - RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000463 all species →	Biological Process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0042254 all species →	Biological Process	ribosome biogenesis	Interproscan
GO:0070545 all species →	Cellular Component	PeBoW complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14843	PES1, NOP7; pescadillo	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.