Gene detail

Detailed information of g5366.t1 in Acropora digitifera

Genomic Location: chr3Alt:2403213...2419648
NR annotation: XP_029196943.2, fibroblast growth factor receptor 4-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g5366.t1

ATGATGGGCAAGATTTTAAGCCGTCGCAACGGAGCCTTCTTGATTGTTTTCATTTTATGCGGAATCTCAGTCCTTTCAGCTCAGCACAGTCAAGGTCCTCAAGTGAAACACACTAATGGTCCGCGGGTGGTTGTTATCGTTGGGGAATACTCAGTCAAGCTACAATGCAACGTGAAAAACGCTGACGATTACAACTGGTACAAAGACGGTGTCCGCATAAACGTGTCACTTCCGGAGCGTTATAGTGTCAAGAAAAACAGGTATCTCGAAATCGAAGACGTTGAAAGAACAGACAGCGGATTGTTCACTTGTGTGACCTCAAACAACGTCGGGAGTGCAAATTGCTCTATTAAACTCTTAGTGGCAGATCCTACACTCCCACCCAACAAGAGCAACGAAGGAGAGAAACCTTCTTGGGTTAATTTGAAGAAAATGCAATCCACACACAGGAAGTTCAGTGAGGGCGAGAAGGTTCAGCTCACTTGTGAGGCTAACGGCGATCCCATACCAGTGATCACGTGGTATAAAGATGGCAAAGTCTACCGGGGGAGGCCTAATTCTGGGCAAGTGATCAACCCCGGTAAATATGACTACAAGATATCTTTCATGGGATTAAATTTGGATGATAAAGGGAATTTTACGTGCAATGTATCCAACGTCCATGGATGGATAGCATATTCCTTCGTCATAGATGTTAAAGCGAAAGTGCGCAGCAAACCTCATGTCATTACAAAATGGGAGCAAAAAGATCCCATCTATGTTGGTACTGACGTTGTAATTCACTGTATGGTATTGACACAGGATAAAGAAACAAAATTCCACTGGTTGTTCTCGCGTAATGTATCGTCAAATAAAGATGGCGTCCTCATAGACGAGCGCAGGTACAAACAGCCCCTGTTGATTCCGAAAGATTTAACCATATCAAATGTGAAGTTTGAATTGAAGCTGGAAAACCTTACCATTGATGATTCTGGCACGTATTTATGCAAAGCCCAAAATAAAGTTGGTTATGCACAAAGTGGGGTTATTCTCACTGTCAGCTATCCTCCACCCACTGAATCTATAACATCAACAGTTTCGACCACAGCCAGGTCTCTTCCCAATTCGCCTGCTGCTAAAACCATCGGAACCGAAATTAGTGGGCTTGAAGTCGGTCTTCTGGCGGGAGCGTGCGCATTGTTTATCGGGTTCGTCATTGTGATGTGGTACTATTTTCGACGTGGAAGGCAAAAAGGAACGCATAACATTCCTGATGCCAAATACGACGTGCCAGCGGAAGGTGTCACAGTTGAACCTCGAAGCTTCGTTAGAAGAACGCCGTCCACTTCTTCAACCGGATCAGCGGCAGCTTTTTTGATGCGGCAGAGAAGTTTTCGCCAACGCTTAGAGTCGAGGCTTATGCAAGTTTCGGAAATCGAAGTACCGTACGAAGAAGCTTGGGAAATTGACAGAAGCCTTCTTGTGTTGTTAGACGTTTTGGGTGAAGGAGCTTTCGGTCGAGTGCATAAAGCAGAAGCTGTTGGTCTCGACGACTCCTCCAACGCGGTCACTGTTGCTGTTAAAATGTTAAAGGAGGATGCCTCGGATCAAGAATTTATGGATTTGGTCTCAGAAATGAAAGTGATGAAAACAATAGGAAAACACAAAAATATCGTCAACTTACTGGGAGTTTGCACTCTTGAAGGTCCCTTGTTTGTTGTCGTTGAATACGCGGCCAATGGTAACCTCCGTCAGTTCCTTCAAGAGAGAAGACCGGTGCTAGGGTACGAAGCTAGCACTCATTCTCCCGAGGTCCTCACTTTGCAAGATCTTCTGTGTTTTTGTTACCAAGTGGCCAAGGGTATGGAATTTCTGTCCTCCCGAAAGTGCATTCACCGAGATCTTGCTGCTCGAAATATCCTGGTTGACGAAGACAGAGTTATGAAGATTGCCGATTTTGGATTGGCTAGAAACGTACATGAAGATGATTATTACAGAAAAACAACTGATGGAAGGTTACCTGTGAAGTGGATGGCTATTGAGGCGTTAATCGATCGAGTTTATACAACGCAGAGCGATGTCTGGTCGTTTGGAGTTCTAGCCTGGGAAATTATTACATTTGGAGGCTCACCCTATCCTGGTATTCCTGTGGAGAAGCTTTATTCACTACTCAAATCCGGTTACCGGATGATTCGACCAATCAACTGTTCTAGAGAGCTGTACCAAGTTATGGTCAACTGTTGGAACGAATTGGCCGAAAATCGACCGACATTTCCTGATCTTGTGCGTGAGTTTGACAGTATGATATCCATGCTCTCAGAGAAGGAATACCTTGATCTTCAACCTCCACTGGTCAGTCCGCTGACCGCGAGGACACCTTCGTCGTCGGAAGAAGACAACGTGTTTGGAAGCACAGAACAAGTTTGCGACCTGACGAAAAGTGATAATGCGGTGAATTTTGGATACCTCGCGGAAGACATGGAACAAGATCAGTCTGAGGGTGTCGGCGATGGCTATGAAGACATTAGACGTGACGTTGACAGTGAACCACTGTTGGGTTTTGGAGGGAGCAAAACTTCTTTGTCGTTGACGGCGCCATCATTTTTGGGGAAGCAATGTTTCAACCAGAACAGCGGGAGCGTGGCTTCTTTGTCCTCCCAGTTAAGCAAACACGCTCATGTCTTCGAAGACGGCAATGGGGAAAACGCTAATAAACGTGTAGATGTCTTGGCAAATGATCCCGATCAGGGAAGTGATGACGCGTTTGAAAGTGCTGACATTGTTCCCGGAAAAACGGAACCACCCAACGGGGCTCCGTCTTCGCTAAGCAACGGAGTAGTGGAAAGTAGTCTAGGTTCTACGAAACTTGATCCAGCGGTGTTAGTGCATCGCGCAGCCTCAGAGAAGCCAAAGCCCACGAGACGACCGTCCCAACAGACTGAGGTGTGA

Transcript

chr3Alt.g5366.t1

AATACCTTTTCACTCTTTCGCGGTGAGGCAGTTCATTTAATTTCCCGAGGCTACTCTTGAAGTTGGAGGTTTAAAGGAATTTGTCAAGCTGTGGATGAAGGTTTTGGCTGTTCGAGGACTATGGTACAAGGCAAAATGCACCATTAAAACGAAACGAGGATCACGCGCGAGGGTTTCAGGCAGAGTACGCGTCAAGCATTGATACTCTGTCGCCAGTGGTTCATGAAGGAGAATTTTCCACAAGTGTTGAAAGCTAAGCGTCACGAAGGGTCAGGAGACTCAAGGGTTCACTAGTCCACAACGAAATGTCTGAAGGCTAAAATAACGCGAGCGGAGAGATGATGGGCAAGATTTTAAGCCGTCGCAACGGAGCCTTCTTGATTGTTTTCATTTTATGCGGAATCTCAGTCCTTTCAGCTCAGCACAGTCAAGGTCCTCAAGTGAAACACACTAATGGTCCGCGGGTGGTTGTTATCGTTGGGGAATACTCAGTCAAGCTACAATGCAACGTGAAAAACGCTGACGATTACAACTGGTACAAAGACGGTGTCCGCATAAACGTGTCACTTCCGGAGCGTTATAGTGTCAAGAAAAACAGGTATCTCGAAATCGAAGACGTTGAAAGAACAGACAGCGGATTGTTCACTTGTGTGACCTCAAACAACGTCGGGAGTGCAAATTGCTCTATTAAACTCTTAGTGGCAGATCCTACACTCCCACCCAACAAGAGCAACGAAGGAGAGAAACCTTCTTGGGTTAATTTGAAGAAAATGCAATCCACACACAGGAAGTTCAGTGAGGGCGAGAAGGTTCAGCTCACTTGTGAGGCTAACGGCGATCCCATACCAGTGATCACGTGGTATAAAGATGGCAAAGTCTACCGGGGGAGGCCTAATTCTGGGCAAGTGATCAACCCCGGTAAATATGACTACAAGATATCTTTCATGGGATTAAATTTGGATGATAAAGGGAATTTTACGTGCAATGTATCCAACGTCCATGGATGGATAGCATATTCCTTCGTCATAGATGTTAAAGCGAAAGTGCGCAGCAAACCTCATGTCATTACAAAATGGGAGCAAAAAGATCCCATCTATGTTGGTACTGACGTTGTAATTCACTGTATGGTATTGACACAGGATAAAGAAACAAAATTCCACTGGTTGTTCTCGCGTAATGTATCGTCAAATAAAGATGGCGTCCTCATAGACGAGCGCAGGTACAAACAGCCCCTGTTGATTCCGAAAGATTTAACCATATCAAATGTGAAGTTTGAATTGAAGCTGGAAAACCTTACCATTGATGATTCTGGCACGTATTTATGCAAAGCCCAAAATAAAGTTGGTTATGCACAAAGTGGGGTTATTCTCACTGTCAGCTATCCTCCACCCACTGAATCTATAACATCAACAGTTTCGACCACAGCCAGGTCTCTTCCCAATTCGCCTGCTGCTAAAACCATCGGAACCGAAATTAGTGGGCTTGAAGTCGGTCTTCTGGCGGGAGCGTGCGCATTGTTTATCGGGTTCGTCATTGTGATGTGGTACTATTTTCGACGTGGAAGGCAAAAAGGAACGCATAACATTCCTGATGCCAAATACGACGTGCCAGCGGAAGGTGTCACAGTTGAACCTCGAAGCTTCGTTAGAAGAACGCCGTCCACTTCTTCAACCGGATCAGCGGCAGCTTTTTTGATGCGGCAGAGAAGTTTTCGCCAACGCTTAGAGTCGAGGCTTATGCAAGTTTCGGAAATCGAAGTACCGTACGAAGAAGCTTGGGAAATTGACAGAAGCCTTCTTGTGTTGTTAGACGTTTTGGGTGAAGGAGCTTTCGGTCGAGTGCATAAAGCAGAAGCTGTTGGTCTCGACGACTCCTCCAACGCGGTCACTGTTGCTGTTAAAATGTTAAAGGAGGATGCCTCGGATCAAGAATTTATGGATTTGGTCTCAGAAATGAAAGTGATGAAAACAATAGGAAAACACAAAAATATCGTCAACTTACTGGGAGTTTGCACTCTTGAAGGTCCCTTGTTTGTTGTCGTTGAATACGCGGCCAATGGTAACCTCCGTCAGTTCCTTCAAGAGAGAAGACCGGTGCTAGGGTACGAAGCTAGCACTCATTCTCCCGAGGTCCTCACTTTGCAAGATCTTCTGTGTTTTTGTTACCAAGTGGCCAAGGGTATGGAATTTCTGTCCTCCCGAAAGTGCATTCACCGAGATCTTGCTGCTCGAAATATCCTGGTTGACGAAGACAGAGTTATGAAGATTGCCGATTTTGGATTGGCTAGAAACGTACATGAAGATGATTATTACAGAAAAACAACTGATGGAAGGTTACCTGTGAAGTGGATGGCTATTGAGGCGTTAATCGATCGAGTTTATACAACGCAGAGCGATGTCTGGTCGTTTGGAGTTCTAGCCTGGGAAATTATTACATTTGGAGGCTCACCCTATCCTGGTATTCCTGTGGAGAAGCTTTATTCACTACTCAAATCCGGTTACCGGATGATTCGACCAATCAACTGTTCTAGAGAGCTGTACCAAGTTATGGTCAACTGTTGGAACGAATTGGCCGAAAATCGACCGACATTTCCTGATCTTGTGCGTGAGTTTGACAGTATGATATCCATGCTCTCAGAGAAGGAATACCTTGATCTTCAACCTCCACTGGTCAGTCCGCTGACCGCGAGGACACCTTCGTCGTCGGAAGAAGACAACGTGTTTGGAAGCACAGAACAAGTTTGCGACCTGACGAAAAGTGATAATGCGGTGAATTTTGGATACCTCGCGGAAGACATGGAACAAGATCAGTCTGAGGGTGTCGGCGATGGCTATGAAGACATTAGACGTGACGTTGACAGTGAACCACTGTTGGGTTTTGGAGGGAGCAAAACTTCTTTGTCGTTGACGGCGCCATCATTTTTGGGGAAGCAATGTTTCAACCAGAACAGCGGGAGCGTGGCTTCTTTGTCCTCCCAGTTAAGCAAACACGCTCATGTCTTCGAAGACGGCAATGGGGAAAACGCTAATAAACGTGTAGATGTCTTGGCAAATGATCCCGATCAGGGAAGTGATGACGCGTTTGAAAGTGCTGACATTGTTCCCGGAAAAACGGAACCACCCAACGGGGCTCCGTCTTCGCTAAGCAACGGAGTAGTGGAAAGTAGTCTAGGTTCTACGAAACTTGATCCAGCGGTGTTAGTGCATCGCGCAGCCTCAGAGAAGCCAAAGCCCACGAGACGACCGTCCCAACAGACTGAGGTGTGAGGCTAACCTGAAGATCAGCAAGACAGTTTTCTACCTTACAAAGATTGCGTGTCCTGGAGTCTCGGCTATGGGGTTTTTAAGAGACTAACCTTCCTGTAACTTTTGCTACAGATGGGCATCCTATTCATTGTGTAAACTTTGAGGAAAAATAGCCTTTCTGTATCATTTCGACTTGTGGCGCCTTGCTTCATTGCGAGGTACAAGTTAATTCATCGCGTTGTGCCCATTACAAGTTGAGAAATCGCTGACTCGAAAACCTACATAAAGGAACCCATACTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P11362	Fibroblast growth factor receptor 1 OS=Homo sapiens OX=9606 GN=FGFR1 PE=1 SV=3
P16092	Fibroblast growth factor receptor 1 OS=Mus musculus OX=10090 GN=Fgfr1 PE=1 SV=2
Q04589	Fibroblast growth factor receptor 1 OS=Rattus norvegicus OX=10116 GN=Fgfr1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07686 all species →	V-set	Immunoglobulin V-set domain	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013106 all species →	Domain	Immunoglobulin V-set domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR020635 all species →	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR050122 all species →	Family	Receptor Tyrosine Kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24416 all species →	TYROSINE-PROTEIN KINASE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0004714 all species →	Molecular Function	transmembrane receptor protein tyrosine kinase activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007169 all species →	Biological Process	cell surface receptor protein tyrosine kinase signaling pathway	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0033674 all species →	Biological Process	positive regulation of kinase activity	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g5366.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g5366.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

122.2Max TPM

82.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	81.96	122.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	122.17
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	113.33
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	111.13
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	108.01
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	100.19
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	92.60
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	92.22
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	90.65
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	90.03
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	89.53
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	89.30
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	88.39
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	87.83
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	87.57
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	86.20
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	85.39
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	83.69
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	81.83
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	79.69
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	78.89
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	78.57
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	77.09
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	75.94
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	75.78
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	75.28
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	74.55
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	74.35
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	73.58
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	71.80
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	71.17
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	69.15
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	68.60
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	68.25
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	68.05
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	66.05
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	64.78
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	64.63
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	64.06
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	56.08

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.