Detailed information of g537.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_029195386.2, uncharacterized protein LOC114961005 isoform X3 [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O51222Protein HflC OS=Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) OX=224326 GN=hflC PE=3 SV=1
P0ABC5Modulator of FtsH protease HflC OS=Escherichia coli O157:H7 OX=83334 GN=hflC PE=3 SV=1
P0ABC4Modulator of FtsH protease HflC OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=hflC PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00071RasRas familyDomainInterproscan
PF14473RD3RD3 proteinFamilyInterproscan
PF00140Sigma70_r1_2Sigma-70 factor, region 1.2FamilyInterproscan
PF04542Sigma70_r2Sigma-70 region 2 DomainInterproscan
PF03979Sigma70_r1_1Sigma-70 factor, region 1.1FamilyInterproscan
PF04545Sigma70_r4Sigma-70, region 4DomainInterproscan
PF04539Sigma70_r3Sigma-70 region 3FamilyInterproscan
PF16796Microtub_bdMicrotubule bindingDomainInterproscan
PF00169PHPH domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF01189Methyltr_RsmB-F16S rRNA methyltransferase RsmB/FFamilyInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF00285Citrate_syntCitrate synthase, C-terminal domainDomainInterproscan
PF04712Radial_spokeRadial spokehead-like proteinFamilyInterproscan
PF01145Band_7SPFH domain / Band 7 familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050227FamilyRas-related protein RabInterproscan
IPR001806FamilySmall GTPaseInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR005225DomainSmall GTP-binding protein domainInterproscan
IPR028092FamilyRetinal degeneration protein 3Interproscan
IPR000943DomainRNA polymerase sigma-70Interproscan
IPR042189Homologous_superfamilySigma-70 factor, region 1.1 superfamilyInterproscan
IPR013325Homologous_superfamilyRNA polymerase sigma factor, region 2Interproscan
IPR013324Homologous_superfamilyRNA polymerase sigma factor, region 3/4-likeInterproscan
IPR009042DomainRNA polymerase sigma-70 region 1.2Interproscan
IPR007627DomainRNA polymerase sigma-70 region 2Interproscan
IPR007127DomainRNA polymerase sigma factor 70, region 1.1Interproscan
IPR050239FamilySigma-70 factor family, RNA polymerase initiation factorsInterproscan
IPR007630DomainRNA polymerase sigma-70 region 4Interproscan
IPR028630FamilyRNA polymerase sigma factor RpoDInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR007624DomainRNA polymerase sigma-70 region 3Interproscan
IPR012760DomainRNA polymerase sigma factor RpoD, C-terminalInterproscan
IPR014284DomainRNA polymerase sigma-70 like domainInterproscan
IPR001752DomainKinesin motor domainInterproscan
IPR036961Homologous_superfamilyKinesin motor domain superfamilyInterproscan
IPR027640FamilyKinesin-like proteinInterproscan
IPR031852DomainSpindle pole body-associated protein Vik1/Cik1, microtubule binding domainInterproscan
IPR001849DomainPleckstrin homology domainInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR023270FamilytRNA (C5-cytosine) methyltransferase, NCL1Interproscan
IPR018314Conserved_siteBacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved siteInterproscan
IPR023267FamilyRNA (C5-cytosine) methyltransferaseInterproscan
IPR049560DomainSAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic coreInterproscan
IPR001678DomainSAM-dependent methyltransferase RsmB-F/NOP2-type domainInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR002343FamilyParaneoplastic encephalomyelitis antigenInterproscan
IPR019810Active_siteCitrate synthase active siteInterproscan
IPR002020FamilyCitrate synthaseInterproscan
IPR016143Homologous_superfamilyCitrate synthase-like, small alpha subdomainInterproscan
IPR036969Homologous_superfamilyCitrate synthase superfamilyInterproscan
IPR016142Homologous_superfamilyCitrate synthase-like, large alpha subdomainInterproscan
IPR010109FamilyCitrate synthase, eukaryotic-typeInterproscan
IPR006802FamilyRadial spokehead-like proteinInterproscan
IPR036013Homologous_superfamilyBand 7/SPFH domain superfamilyInterproscan
IPR010200FamilyHflCInterproscan
IPR001107DomainBand 7 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47977RAS-RELATED PROTEIN RABInterproscan
PTHR28489RENTINAL DEGENERATION 3-LIKEInterproscan
PTHR30603RNA POLYMERASE SIGMA FACTOR RPOInterproscan
PTHR47972KINESIN-LIKE PROTEIN KLP-3Interproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR22808NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAININGInterproscan
PTHR24012RNA BINDING PROTEINInterproscan
PTHR11739CITRATE SYNTHASEInterproscan
PTHR22069MITOCHONDRIAL RIBOSOMAL PROTEIN S18Interproscan
PTHR42911MODULATOR OF FTSH PROTEASE HFLCInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006352Biological ProcessDNA-templated transcription initiationInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0016987Molecular Functionsigma factor activityInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003777Molecular Functionmicrotubule motor activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0007018Biological Processmicrotubule-based movementInterproscan
GO:0008017Molecular Functionmicrotubule bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0016428Molecular FunctiontRNA (cytidine-5-)-methyltransferase activityInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0000049Molecular FunctiontRNA bindingInterproscan
GO:0001510Biological ProcessRNA methylationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0008173Molecular FunctionRNA methyltransferase activityInterproscan
GO:0030488Biological ProcesstRNA methylationInterproscan
GO:1990904Cellular Componentribonucleoprotein complexInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0046912Molecular Functionacyltransferase activity, acyl groups converted into alkyl on transferInterproscan
GO:0004108Molecular Functioncitrate (Si)-synthase activityInterproscan
GO:0005759Cellular Componentmitochondrial matrixInterproscan
GO:0005975Biological Processcarbohydrate metabolic processInterproscan
GO:0006099Biological Processtricarboxylic acid cycleInterproscan
GO:0006101Biological Processcitrate metabolic processInterproscan
GO:0005930Cellular ComponentaxonemeInterproscan
GO:0035082Biological Processaxoneme assemblyInterproscan
GO:0044458Biological Processmotile cilium assemblyInterproscan
GO:0060294Biological Processcilium movement involved in cell motilityInterproscan
GO:0001534Cellular Componentradial spokeInterproscan
GO:0060271Biological Processcilium assemblyInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0052547Biological Processregulation of peptidase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03086rpoD; RNA polymerase primary sigma factor-Peptidases and inhibitorsko01002deepkoala
Domain-containing proteins not elsewhere classifiedko04990deepkoala
Transfer RNA biogenesisko03016deepkoala
GTP-binding proteinsko04031deepkoala
Glyoxylate and dicarboxylate metabolismko00630deepkoala
Transcription machineryko03021deepkoala

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