Gene detail

Detailed information of g5390.t1 in Tripedalia maipoensis

Genomic Location: scaffold_2:24436171...24463645
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g5390.t1

ATGGCGGATAACTCAGCTGTTGAAAGCACGCTGGGTGAAAGGAAGCGAGCGATAAATTGTCTAAAAGTACTCTCTAAGTTGGGAGCAGGCTTGCTTACTGTAAGTGAAAAAATGGAAAAAGAGATAAAAGAAGTTCTTGAACCTTTGGACTTATCTGAATCAGAATCCCTTCAGGAGGATTCTGAGTACGAGAACGAGGAAAAAACCCCACATGAAAATCAAGACAAGAATCATCAGAAGCTGCTTAAAGATATATCAAAGTTATCAGCAGGAAAAAAGAGAAACATAAAGAAGTCTGTAAGATCAGAACCCAGCAAAGATGTATCGGAATTCACTTGGGCCTCTAGTAAAGCTGAGAAGATTGAACTTCATGACCTCATGCAATCCATCTCTGGTGCCACAGCAGCCAACAGTGATCTTAGGAAAAACCTAAAAAAATTGGAAGAGAAAGGTAAAGTCATTGATGTTCCATTGCCAAAGCCTCAACAGGATAAGATTGAAAGAGCAGTTGCATATGATGAAAATGTCAAGGAAGTTAGTGTCTGGGAGCCAACAGTGATCAACAACAGAAGTGCAGAGCATTTGTCCTTCCCTATGCAAAGCTATGTCCCTCCACGACCCTCCATCAAGGGCATGGTCGCTAGAAAGAAGGTTTCAGGCCGGAAGAATGCGTTAGAATTAGAAATTGAGGCTGTTCTCAAGGGAAGCTCTTATGTTTTGGAGCGAAATGGGAAGGAGCTGACTGCTGCAGAGGAGGACGCCCTCCGGAATGTTGATGTTGAGGAGGCACTTGCAAGAAGAAAGGAGCTTCAGAGACTCCGAGTCCTGCAGTCCTACTACGAAGCAAAATGCAAGCGCATGAAGAAGATCAAGAGCAAAAAGTATCATCGCATTTTGAAAAAGGCAGAGAAAAAGAAACAGGAGAAGACCGACTTGGAAGAACTCGCAAAGTCGGATCCGACCCTTTTTCAATCTGAGTTAGAGAAAGCAGAGAGGATCAGGGCTCTGGAAAGAGCGAATCTCAGGCACAGGAATGCTTCGAAATGGGCCAAGAATATGATCACGAAAGGGCACATGTCGACCAAGGATAAGCAAGCCATCAACGAACAACTTCGAATCAGCAGGACCATGACAGAACACAAGCTACAGCTGAGTGATAGCGAAGAGGACGCAGAAGCAGTGGATGATGGGAACGAAAATGAGCTAAAACTCTTATCACGCGAATCCATACTAGAGGACAATCCTTGGTTGCTTGGAAGTGAGGAGAAGAAAAGTCACGAGAAAGAAACACGAGCGGCACCGCTGCGTCTGAAGAAACTGGAGCCCATCGCAAACGAGGATCTCGATGTTCATGAGTCGGAGCCAGAGGGAAACGAGGCTAGTTCTGGTGAAGAGTGGGACGAAGCAGGCAAAATCGAAGATTCACAAGAAAAGTCTATGAAATCGCGCAAAAAAAAGAAACCCACAAAAGATAGTGGTGTGGTTAAAAAGACAAAGCAAAGGAAGGCCAAGGAAAGTCCCGCAACGCCAAAGCCAGACGCAGTAAGGGAGGATATCGAAAATGTATCGAAATCGAGGAAACCTGAACCTAGCAAACCTGAAAATAACTTCCCTCTGAGCAGTACTGTGGTCTCTGTTTCTGATTTTCTGAGTGGTGGTGGAGTCACTGAGGAACAATCTAGTGCTGTCAATGAAAAAAGTGCCATCACATCACGCTTAAAACGTGCTAAAGGGTCACACAGAAGGAATAAGGGAAGTACAGAGATGACTATGCCAAAGGAGAAACCGAAACAAGACAGCAACGAGAATCTCACCCCAAGTCAGTTTTTAAATGTGGAGAAGGCAGCTGCGGAACTTCTGCCTGCTAGCGAAGACGAGGCTGACAGTGATGTTGGAGAGGATCAGACCCTGATGATGACCATAAGAGAAGCTTTTGCAAGTGATGACGTCATCGAAGAGTTTGCGTTCGAGAAACGCGACGTGATTGAAAAGTCCAAACCTAAAGACATCGATCTCACTATTCCAGGCTGGGGTGAATGGGGTGGCGCAGGGGTGCAGCCTTCCAAGAAGAAGCTAAGGAAATTCGTCAAGAAAGGAAAGCCTGCCCCTCTCAGAAAAGATTCAAAACTCCCCCTGGTTATCATAAACGAGGACAGAAGCTCAAAATTCGCCAAAACACAAGTCTCCAGTGTCCCGTTCCCTTTTTCGGACAAAGAGCAGTTCGAGAAGAGCATACGACAACCAATCGGTCCTCAGTGGAATACGCCCTCGATTACGAGCAAGCTCATCGAGCCTCGTGTAAGCGTCGCCAAAGGGACTGTGATTGAGCCCATCAAGGCTACCAAAGCAATCAAAAAGAGGCGGGCAGCCAACTGGCACAAAACTGAGAACGATATGTCAGATTTGAAAGTGAAGAAGAAAAAAGGTCCATCTTTATGA

Transcript

g5390.t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04615 all species →	Utp14	Utp14 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006709 all species →	Family	Small-subunit processome, Utp14	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14150 all species →	U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14567	UTP14; U3 small nucleolar RNA-associated protein 14	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.