Detailed information of g5391.t1 in Acropora digitifera

Genomic Location: chr3Alt:2648931...2651462
NR annotation: XP_015773500.1, PREDICTED: tripartite motif-containing protein 45-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q1PSW8E3 ubiquitin-protein ligase TRIM71 OS=Mus musculus OX=10090 GN=Trim71 PE=1 SV=1
D3ZVM4E3 ubiquitin-protein ligase TRIM71 OS=Rattus norvegicus OX=10116 GN=Trim71 PE=3 SV=1
E1BJS7E3 ubiquitin-protein ligase TRIM71 OS=Bos taurus OX=9913 GN=TRIM71 PE=3 SV=2
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00643
all species →		zf-B_boxB-box zinc fingerDomainInterproscan
PF00630
all species →		FilaminFilamin/ABP280 repeatDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR047153
all species →		FamilyTRIM45/56/19Interproscan
IPR014756
all species →		Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR000315
all species →		DomainB-box-type zinc fingerInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR017868
all species →		RepeatFilamin/ABP280 repeat-likeInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR25462
all species →		BONUS, ISOFORM C-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for g5391.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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