Gene detail

Detailed information of g5398.t1 in Montipora capitata

Genomic Location: Sc0000106:476990...490454
NR annotation: XP_044178639.1, midasin-like [Acropora millepora]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g5398.t1

atggaacaaccgcagtttgctttcacaatcaggaaacttgaaattgatgaaaccaagtttcggcggccagacgaaggaacaaaacgtcgacatgcagttggtagcatgtccaaggcatcatataacagtcctggtggagcaagctatccaattacaagtgccagttctacaatcttggacaaattgtggacaagggtacaagttgagtccctttcaaaagaggaactaatagatgtgctgtgtaagaagtacccacacctggaaacagtggctgctaaacttgtagatattttctgcttgttatcagcagatcccagacttttttctactcctgatacaaccaactgttgcttgcctcatgacaaacgactttcatcaataagggactttataaagtggtgcagcagaattgctgtaactgcttgtgggtcaccttttcagctagattcaaaggatgtgttccttgaagcccaggactgtttcactgctccattgccaaagagagaagacaggaggttgctggatatagcgattggagccaagttaggtttaacaaaagagaagattgagttcttctcttttaattacaaacccggtgtgcacatttcacctttgtcgttgactgttggtaggatcactctgacaagaaacaagcaaggaagtgaattgtcaaacttaattcccaaaagtcttccaagatatgctcacactagacattccttggtactgctggagaaacttgcagcttgcattagaaacaatgaaccagttttacttgttggagaaacaggaactgggaagacctccactgtccagtaccttgcagcgcagtgtgcaaccaacttaaaagttgttaatatgagccaacagagtgacagttcggatctccttggtggttacaagccagtggagatgaaacagatcgttgctccagttagggagaaatttgaagtcctcttctgcaagactttctcaagaaaacaaaatatgaaatttttgggtcacatacagaggtgttatgctgaaggaatgtgggaaatgttgttcaagttgatggtgcattctcaaaaaagtgctttaaagagagtaatgaaagatgatcaagtgggtcatcttcgtgtagagtggcaaaacttaaagcaggacattcaacagctgaaaaagcaacagaagaatgcagagagtgcaatggccttcagatttgtcgagggtacagttgtacaagccttgcgaaatggagactgggttttacttgatgagatcaatttggcaatgccagagacactagagtgtctttgtggtttgctggagagttcatctggttctcttgtactcatggaaagagggtttacagaaatctttgtgagtgagttggaagacactgctgacttaaggatcctggctgtggattaccttaagggtctgtctccaaatgctgctattgtggatggaattgtgaggttttatgtcactgtcaagcaggaagcaaaggagaaattgactgatggcacagggcacaagcctcattacagtttgaggacattgtgcagagcattacaatatgcagcaccaaaccctcatcaaaattatttgaggtctatttatgaggggttttgcttgagttttctgacacagttggaccgctcatcccaccctgctgtagaatccctcattaaggaacatcttctgggtcatgttaatgcatccagcatcctgaaacaacctttgcttgcaccacaaggccacggacagttctgcaattttgagggtttctggattgccatgggcagcaaagaaccctttgtattgccagagtatgtgttgactgcttcagtgaaggcaaacttgaaggatctgagcagggttgttgcagcaaggaaacttccggtcttaattcaaggagaaacttctgttggtaaaaccagcctcattcagtggcttgctaaggcatcaggtaaccactgtgttagaattaataaccatgaacacacagatattcaagaataccttggctgttacacctcgggtgaaaatggtaaacttgtcttcaaagaaggggttttggtagatgccatgaggagaggctattggataattttggatgaactcaatttagccccatctgacgtactggaagctcttaatagggtgctggatgataacagagagctgttcattcctgaaacacaggaaactattgctgcacatcccatgttcatgctgtttgctactcagaatcctcctggacattatggtggaagaaaggttcctttagttgaaatgtataattttggctttgtctcttga

Transcript

g5398.t1

ATGGAACAACCGCAGTTTGCTTTCACAATCAGGAAACTTGAAATTGATGAAACCAAGTTTCGGCGGCCAGACGAAGGAACAAAACGTCGACATGCAGTTGGTAGCATGTCCAAGGCATCATATAACAGTCCTGGTGGAGCAAGCTATCCAATTACAAGTGCCAgttctacaatcttggacaaattgtGGACAAGGGTACAAGTTGAGTCCCTTTCAAAAGAGGAACTAATAGATGTGCTGTGTAAGAAGTACCCACACCTGGAAACAGTGGCTGCTAAACTTGTAGATATTTTCTGCTTGTTATCAGCAGATCCCAGACTTTTTTCTACTCCTGATACAACCAACTGTTGCTTGCCTCATGACAAACGACTTTCATCAATAAGGGACTTTATAAAGTGGTGCAGCAGAATTGCTGTAACTGCTTGTGGGTCACCTTTTCAGCTAGATTCAAAGGATGTGTTCCTTGAAGCCCAGGACTGTTTCACTGCTCCATTGCCAAAGAGAGAAGACAGGAGGTTGCTGGATATAGCGATTGGAGCCAAGTTAGGTTTAACAAAAGAGAAGATTGAGTTCTTCTCTTTTAATTACAAACCCGGTGTGCACATTTCACCTTTGTCGTTGACTGTTGGTAGGATCACTCTGACAAGAAACAAGCAAGGAAGTGAATTGTCAAACTTAATTCCCAAAAGTCTTCCAAGATATGCTCACACTAGACATTCCTTGGTACTGCTGGAGAAACTTGCAGCTTGCATTAGAAACAATGAACCAGTTTTACTTGTTGGAGAAACAGGAACTGGGAAGACCTCCACTGTCCAGTACCTTGCAGCGCAGTGTGCAACCAACTTAAAAGTTGTTAATATGAGCCAACAGAGTGACAGTTCGGATCTCCTTGGTGGTTACAAGCCAGTGGAGATGAAACAGATCGTTGCTCCAGTTAGGGAGAAATTTGAAGTCCTCTTCTGCAAGACTTtctcaagaaaacaaaatatgaaattTTTGGGTCACATACAGAGGTGTTATGCTGAAGGAATGTGGGAAATGTTGTTCAAGTTGATGGTGCATTCTCAAAAAAGTGCTTTAAAGAGAGTAATGAAAGATGATCAAGTGGGTCATCTTCGTGTAGAGTGGCAAAACTTAAAGCAGGACATTCAACAGCTGAAAAAGCAACAGAAGAATGCAGAGAGTGCAATGGCCTTCAGATTTGTCGAGGGTACAGTTGTACAAGCCTTGCGAAATGGAGACTGGGTTTTACTTGATGAGATCAATTTGGCAATGCCAGAGACACTAGAGTGTCTTTGTGGTTTGCTGGAGAGTTCATCTGGTTCTCTTGTACTCATGGAAAGAGGGTTTACAGAAATCTTTGTGAGTGAGTTGGAAGACACTGCTGACTTAAGGATCCTGGCTGTGGATTACCTTAAGGGTCTGTCTCCAAATGCTGCTATTGTGGATGGAATTGTGAGGTTTTATGTCACTGTCAAGCAGGAAGCAAAGGAGAAATTGACTGATGGCACAGGGCACAAGCCTCATTACAGTTTGAGGACATTGTGCAGAGCATTACAATATGCAGCACCAAACCCTCATCAAAATTATTTGAGGTCTATTTATGAGGGGTTTTGCTTGAGTTTTCTGACACAGTTGGACCGCTCATCCCACCCTGCTGTAGAATCCCTCATTAAGGAACATCTTCTGGGTCATGTTAATGCATCCAGCATCCTGAAACAACCTTTGCTTGCACCACAAGGCCACGGACAGTTCTGCAATTTTGAGGGTTTCTGGATTGCCATGGGCAGCAAAGAACCCTTTGTATTGCCAGAGTATGTGTTGACTGCTTCAGTGAAGGCAAACTTGAAGGATCTGAGCAGGGTTGTTGCAGCAAGGAAACTTCCGGTCTTAATTCAAGGAGAAACTTCTGTTGGTAAAACCAGCCTCATTCAGTGGCTTGCTAAGGCATCAGGTAACCACTGTGTTAGAATTAATAACCATGAACACACAGATATTCAAGAATACCTTGGCTGTTACACCTCGGGTGAAAATGGTAAACTTGTCTTCAAAGAAGGGGTTTTGGTAGATGCCATGAGGAGAGGCTATTGGATAATTTTGGATGAACTCAATTTAGCCCCATCTGACGTACTGGAAGCTCTTAATAGGGTGCTGGATGATAACAGAGAGCTGTTCATTCCTGAAACACAGGAAACTATTGCTGCACATCCCATGTTCATGCTGTTTGCTACTCAGAATCCTCCTGGACATTATGGTGGAAGAAAGGTTCCTTTAGTTGAAATGTATAATTTTGGCTTTGTCTCTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NU22	Midasin OS=Homo sapiens OX=9606 GN=MDN1 PE=1 SV=2
Q869L3	Midasin OS=Dictyostelium discoideum OX=44689 GN=mdn1 PE=3 SV=2
Q12019	Midasin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MDN1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001659 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17865 all species →	AAA_lid_5	Midasin AAA lid domain	Domain	Interproscan
PF17867 all species →	AAA_lid_7	Midasin AAA lid domain	Domain	Interproscan
PF07728 all species →	AAA_5	AAA domain (dynein-related subfamily)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041190 all species →	Domain	Midasin AAA lid domain 5	Interproscan
IPR040848 all species →	Domain	Midasin, AAA lid domain 7	Interproscan
IPR011704 all species →	Domain	ATPase, dynein-related, AAA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48103 all species →	MIDASIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0000055 all species →	Biological Process	ribosomal large subunit export from nucleus	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0030687 all species →	Cellular Component	preribosome, large subunit precursor	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g5398.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.