Detailed information of g54.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_031553651.1, 40S ribosomal protein S4-like [Actinia tenebrosa]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q76N24Small ribosomal subunit protein eS4 OS=Chlorocebus aethiops OX=9534 GN=RPS4X PE=1 SV=3
P62705Small ribosomal subunit protein eS4 OS=Felis catus OX=9685 GN=RPS4X PE=2 SV=2
P62701Small ribosomal subunit protein eS4, X isoform OS=Homo sapiens OX=9606 GN=RPS4X PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00153Mito_carrMitochondrial carrier proteinRepeatInterproscan
PF08801Nucleoporin_NNup133 N terminal likeRepeatInterproscan
PF02140Gal_LectinGalactose binding lectin domainDomainInterproscan
PF13513HEAT_EZHEAT-like repeatRepeatInterproscan
PF00338Ribosomal_S10Ribosomal protein S10p/S20eDomainInterproscan
PF00900Ribosomal_S4eRibosomal family S4eFamilyInterproscan
PF1612140S_S4_C40S ribosomal protein S4 C-terminusFamilyInterproscan
PF08071RS4NTRS4NT (NUC023) domainDomainInterproscan
PF00467KOWKOW motifFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR031152FamilyPlexin domain-containing proteinInterproscan
IPR018108RepeatMitochondrial substrate/solute carrierInterproscan
IPR023395Homologous_superfamilyMitochondrial carrier domain superfamilyInterproscan
IPR004870FamilyNucleoporin, Nup155-likeInterproscan
IPR014908DomainNucleoporin, Nup133/Nup155-like, N-terminalInterproscan
IPR000922DomainD-galactoside/L-rhamnose binding SUEL lectin domainInterproscan
IPR043159Homologous_superfamilyD-galactoside/L-rhamnose binding SUEL lectin domain superfamilyInterproscan
IPR036716Homologous_superfamilyPesticidal crystal protein, N-terminal domain superfamilyInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR040122FamilyImportin beta familyInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR001848FamilySmall ribosomal subunit protein uS10Interproscan
IPR040055FamilySmall ribosomal subunit protein uS10mInterproscan
IPR027486DomainSmall ribosomal subunit protein uS10 domainInterproscan
IPR036838Homologous_superfamilySmall ribosomal subunit protein uS10 domain superfamilyInterproscan
IPR041982DomainSmall ribosomal subunit protein eS4, KOW domainInterproscan
IPR013845DomainSmall ribosomal subunit protein eS4, central regionInterproscan
IPR002942DomainRNA-binding S4 domainInterproscan
IPR000876FamilySmall ribosomal subunit protein eS4Interproscan
IPR032277DomainSmall ribosomal subunit protein eS4, C-terminal domainInterproscan
IPR013843DomainSmall ribosomal subunit protein eS4, N-terminalInterproscan
IPR005824DomainKOWInterproscan
IPR014722Homologous_superfamilyLarge ribosomal subunit protein uL2, domain 2Interproscan
IPR018199Conserved_siteSmall ribosomal subunit protein eS4, N-terminal, conserved siteInterproscan
IPR038237Homologous_superfamilySmall ribosomal subunit protein eS4, central domain superfamilyInterproscan
IPR036986Homologous_superfamilyRNA-binding S4 domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13055TUMOR ENDOTHELIAL MARKER 7 RELATEDInterproscan
PTHR45758MITOFERRIN-1-RELATEDInterproscan
PTHR10350NUCLEAR PORE COMPLEX PROTEIN NUP155Interproscan
PTHR46780PROTEIN EVA-1Interproscan
PTHR10527IMPORTIN BETAInterproscan
PTHR13334MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S10Interproscan
PTHR1158130S/40S RIBOSOMAL PROTEIN S4Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0015093Molecular Functionferrous iron transmembrane transporter activityInterproscan
GO:0031966Cellular Componentmitochondrial membraneInterproscan
GO:0048250Biological Processiron import into the mitochondrionInterproscan
GO:0000972Biological Processtranscription-dependent tethering of RNA polymerase II gene DNA at nuclear peripheryInterproscan
GO:0005643Cellular Componentnuclear poreInterproscan
GO:0006405Biological ProcessRNA export from nucleusInterproscan
GO:0006606Biological Processprotein import into nucleusInterproscan
GO:0006913Biological Processnucleocytoplasmic transportInterproscan
GO:0017056Molecular Functionstructural constituent of nuclear poreInterproscan
GO:0036228Biological Processprotein localization to nuclear inner membraneInterproscan
GO:0044611Cellular Componentnuclear pore inner ringInterproscan
GO:0030246Molecular Functioncarbohydrate bindingInterproscan
GO:0090729Molecular Functiontoxin activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0008139Molecular Functionnuclear localization sequence bindingInterproscan
GO:0061608Molecular Functionnuclear import signal receptor activityInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0005763Cellular Componentmitochondrial small ribosomal subunitInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0022627Cellular Componentcytosolic small ribosomal subunitInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K20221IPO4, RANBP4; importin-4-Ribosomeko03011deepkoala
Ribosome biogenesisko03009deepkoala

TOP