Gene detail

Detailed information of g5402.t1 in Tripedalia maipoensis

Genomic Location: scaffold_2:24860852...24886630
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g5402.t1

ATGTATAACGGCATTGGCTTAACCACGCCGCGTGGGTCAGGCACAAATGGCTACGTTCAAAGGAATCTCTCATTTATCCGCATGAGTAAGGAGAAGCTAGATTATGCAAAGGAGCGAGACCTCACCAAATTTGAACAAACGATGACCAGGAAGCCAAACAAGGATATTCTGGAACATGAAAGGAAAAGGCAGGTGGAATTAAAGTGCATGGAAATGAGGGATGTCCTTGAAGAGCAAGGATATGGAGAGGAAGAAATAGAGAGGATGGTCAAGGCCCTTAGGACTGAACTCTTTGAAAAGGAGGGGCTAGAGTCAACTGTTACCAAGCCTAAAGCTCTCAAGGCCAGTGAACTGGGAACACACCAACTTGCAGAGGCAAGTGAGAAGAAAAACGAAAAACTTAAGGAAGCGTTTGGTATTAGTGATACTTATCTGGAGGGAAGTTCATTTAACCCTGAGCATCAGGCAGCTCAGAAAGCAGCTATGGAAGCTGAGAGAGAAGCAAGGAGAAAAGAAATGGAAAAAGAGTGGAAGAGGCAAGAAAAAGAGGAAAGAAAGGAGCTTAAAAACAGAAGAAAAGAAGAGCAGTCTGCAAAGAGGAGCAATAGGAGTGGAGATTCTTCAGAAGATGAAAGGCAAAAGACCAAGAAGAAGAAAAAGGAAAAGGAAAGCACAGCTCAAAGCAGTATCAGTTTGCCTGAGAAGAGTTCTAAGAGGGAGGGTTTGTCTGAAAATGATGTTACAAAGACTGATACAAGAGGTGGGCAATCAAGTCAAGCAATCGATTTGGTTCCTGCTTACGCCAGCTCACCTAGTGACGATGATGAACCAACCTTGAAGGAGGAAAGGAGAGATAATAGGGAGGAGAAACATTTGGGTTTTGAAGGAGGCCAGAAGTATAGAAGAGGCCGTGGTCGTGACTACGACAGTCGCCACGATTATCGTGATGAATACCGTGATCATAGCAGCGACCGTGACAACACGAAAAGGAGACACCACAAACGTGGCAGAACAAGCAGTGAAGAGTCGCACTCAGACCGAGAGCGTCGGGATCGTTCAAGCAAAAGGGGTTCGAGCGGTCGACATCATTCTAAGAGCCGGTCTCTTAGTCCCCATCGTCGTGAACAGTACCCCAAGAAACGAAGACATGTTAGTCGATCAGGTAGTGAATCTCGCAGAGATGGGAAGAGACATCTGGATAGCAGGGAAGACGATTATAGAAGACGACAGCGGTCTTACAGTGGGTCGGACGATGAAAGACGACCACGTTATAGCCAAGGCTCCCTGCCGAGCAGGAGAGATGGGAATGACTATGAAAGGCGCAAGAGAAGTGATGATCGTGAAGACAGAGTCTTCTCCAATGAACGAGTTCACAGAAACAGCAAAGAAGGACCAATGGCAAGGAAATCTCGCACACCAAATAAAACAGGAAGGGACCAGGAGGACAAGTCGTTAGAAGTGGCTACAGAAGTTGGTGATGACAAAGTCACTGCATCTTCGTCTTTGCGAAGTACAGAAACTCCGTCAGCTAAGGAAAGAAGAAGAAACAAGTCTGAATCTGCAGATAGCAAAGGAGAGAATGCAAAGAAACATAACTCAGCTGAAGAAGATAGATATCGAAAGAGAAAGTCAAAGAGATTTACCTCTCCAGAGGGAACGTTATTATTTTCAGAGGAAAAAAGATCCGACAAGATAGCCGCTGACGACATTTATGCAAACATGTTGCAAGAGCCAATCATCTTAAATGAAGTTAGCGATGGGGTTCAAGGGAGGTCCGACAATGGGTCAAAGGATCCCCATATGGGCACTGAAACTGAATACACTAAGGAAGCTGAATCCCAAAGAGAAGAGGGAGAACTAGATGAGCAAGGCTCTGATACTAGCTCCAGACAAAAAAGTGTACACGATAGTTCTGGTATCGCAGATGCCGACTTGAAAGGCCCAAGACCTGAAGAGAAAGGTGCTAAAGAGAAACAGTACTCTGATTCATCCAGTAAAAGTGAGGGGGAAGATTATTGTGATCATGTGACCAAGAAAAAAGTTAAAAGAAGGGTCCGTGGTAGTGAATTTGGGGAAGATGCACGGTCCTCAAGTGAAAATGAAGGTCGTAAGAAAAGTAAGGAATCTGCTGCTGCTAGAAATGCAATTGATGAGAGAACCGAGAATGAAATGGACAGAAAACAAAATCTCCATAGTGAAACGGTTGAAGAAAGGGGGCGTGGAAGTACAAGAAGAGCGGATCGGAAAGAAAAAGAAAAGCAAGCCAGAAATGCCAAGAGAGAAAAGAAGAAAGGAAACCTTCGCTCTTCTGGTAGTGATGCTTACAATGATTCGTCGAAAGTTCCTGAGCAGGGTTTAGCTTCAGTAGAGGTGCATGCTGACAGTTCATCTAGCGTCGAAAAGGAGAGCGAAGTAAAGAAAAAGAAGGGGGAGAAAAAGGCCGAAAACAAGAAAGCAGACCAGTGCTTAAGAGAAAGCAGTAATAAAAAGGGAGCCAAAGTTATGAAAGGGGAAAGCTATGAAAGAAAGGAGATTCATTCGTCAGCAAATCGGCAGAAGAGTCGTTCAGTGGAAGAGGAGCAAAGTGAGCGCGCGTTTGAACACAATAGCAGAAGGAGCGAGGACCACGAGCTTAGCACTGGGGAGTTGCCGAGGAAAGATACACCCCTCGGAAAGGCATATAAAGAGAGGCGTGATGAGAAGGATCAAAAGAGGGATAAGGATGTAAGCAACGGAAAGAGGAGAAATGAGAAAAGGAAAGGGGTCGATGCTAGTCATGAGAGCACTTCAAAGGGTGATATCTTAGACAAGAGAGAGCAAGGAAAAGAGAAACGCCCAGATACAGGTGGAAAGAGGAACTCCCGAGAAGATAAGGCAAAATCAGCACAAAGCGATCGTCATCGAAGAAAATCTTCCAGTGCGTCAAGCAGTTCGGGGTCATCCTCTCGCTCCTCTCGGTCGTCTTCAGGATCTAGTTCCGGATCAAGCAAGGCGCGGGCGCCAAGAAGAAGGAGGGCCTCTAAAACGAGGAAGAAGTCTAGGTCTTCCTCCTCTCGCTCCCGATCACGTTCCAAAAACAGATCTCCGGAGAAAAGGTCTTCACAGTCTCGAGTATCAAAGTCACCTTCTTCAAACAAAGGACCGAGAGAGTCCGCAAATGATAAGGTGACTCAGGATAAAAGGCGAACGAAAGAGAGGCATAGAGGAGTTGATGTATCGAAAGATGAATCGTCAGAGAAGAAAACATCTCAGATATCGGCAGAAGTAGAACGTGGGTCTCCTTCAAAATCGAGGTCAAGGTCAAATTCTAAGGTGAGATCCATTCCAAAATCGGATTCCACCTCAAAGAGTAGTCGTAATAAGGCACATGAAATATCCGAAGTAACTACAAGGGAAATTGAAACGTCTGAGTCACCTCGAGAAGGACTTGCTAAAAAAAGCCCTAAATCATCTCCAAAGAAAAGATTAAACAGAGGGCCATCACCTACCAAGGAAAAGGATGATTTGGGATCTCGTTCTCGGTCCAGATCTAGCGAACGATCATCGTCTAAATCACGTTCACGTTCCAAGTCATCAAGTAGAGCTTCTCGTTCCAGATCTCATTCGCCTGCTCGTGAATCGTCGAAAGTTTTGGATGAAAGAGTGGCATCAGCTTCTCCCTCTGCCATCAAGATATCTCGCAAGTCGCGGTCGGCATCAATCTCCCAATCAAGGTCCCTGTCCCGTTCAAGATCAAAAAGTAACTGTAAATCTCGATCCCGGTCTAAGTCGTCCGTAAGATCATCGTCAGCTTCATCAGGGAAGCAGTCTCGTTCTCCGTCGCGCTCCAGATCGCGATCACAATCTGTGAAATCTGATAAGGGGGACTCGGATAGCTCGTCGTCAGATTCGTCAAGCGCCTCTTCTAAGTCGTCTTCGTCTTCCTCCTCCTCTTCGTCGTCTGACTCCCAGTCGTCATCAAGGTCGCGGTCAAGGTCGACCTCGAAGTCGAAGTCGAGCTCCCGATCAAGATCTAGGTCTAAGTCAAAAGAGAAGGGAGGCCAAGGTCGGAAAACAAAGGGCAAGGAAAGACCAACAGAGAAGAAAACGCCAAGTTCGGAAGTTACTGCTAAGGCAAAAAGGAAACCCGAGTCAGAGTCAAAGAAAAAGAAAGAAAAGGTTAGCAAATCCCCAGAAATGAATGAGAGTCGCAAGGATACCTCGAAAGTCACAGAAAAAGTGCATCATGAGGAAATGGCGGAAGGACGTGAAAGCGACATTGGTGAGGAAACCAAACGGAGGAAGAAGAGCAAAGAAGGAAAGAAAATGGAAGTAAATGAGGAAAGAGAAGGCAATGGAAAGGAAAGCGCTGCTACCGCAGAGAGAACAAGTAAATCAAAGAAAGGAACAAGGGTGTTAGAGGATGTGAAGAAGAAGGATAAGAGGAGAGCGATAAAAAGCCGTGAAGCAAGCGATCGAAGGAAAGCTCGATCGTCAGAAGAGTCTGATGTAGAGGGTAGTGGGACTAAGTCAGACAGTTCTAGTGAGGAGGAAAAAGGAAAGAAAAAACGCAAATCTGGAAGAGATCCACCCAGCTCTTTGGCCCGGTCTAAACGGACGAAGGACAGGAGTGGACAGAGCAGCTCAAGTTCTTCGGATTCGGGATCGGAATCAGAAAGTAGTGAGAGTGAGGCTTCGCCTGAAAGAAAGAAAAGCAAGGTAAGTGGCAAAGAGGAAAAAGTGAAGCAGCATAAACAATTATCCGCGGAAGAGAAGAAACGGAAGCAAAAGTCAAGAAGAAGTCCTTCGCCGTCGGAATCCCGTCGAAGACGACAGCGTAGTTACTCTGCAGGACGGTCGCGTTCAGACCAGCGTGGTAGGCGATCATCCCCCTCTAGTGCTAGGCAAAAATGGGGTATGCAACGAGGCACATGGGTTGGACAGGACAGATATCCGCGAGGTGACAAATCCGAGCATTGGCATCAGGGGCGTCGTCACGTTGAGAGAAGCCCAAGACGGTATTCCGATTATCGACCCCAGCAAGGTAAAGGACCGTCTCGCTCTCGTTCTCGTGACAAGACTTCTGAGCGACGAGAGAGCAGGGAACAGCACCGACGCAGAGAAAGGTCACCAAGTGTCTCTAGAGAAGAAAATAGGAAAAAGAGAAGGAGCATTAGCTCCTCGAGCGACAGGGGAAGGCCAAGCAAAAGCCTTGGTGCAAGGAAGGCATCTCATCGTCATAGATCAAGGTCTCTCTCTCCCGAGAAAGAAGAAGAAAGGCGAGACGTAAAGAGCACAAACAGACAAGGGAAGAAAACCGAAAAGGAAAGTCATAAGAAGAGCTCCAAAGGCAGAGTGAAGGAGAAGAACGAAAGGAGTGAATCAAGTGAATCACATCCGTCGTCAAGCTCAGATTCGGACAGTTCACGTGAAGGAAAGACCAAAGAGTCCAAAAGAGGGAGAAAGAAGAACCGTAAAACGTAG

Transcript

g5402.t1

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003244 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08312 all species →	cwf21	cwf21 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013170 all species →	Domain	mRNA splicing factor Cwf21 domain	Interproscan
IPR051372 all species →	Family	Pre-mRNA-splicing factor CWC21	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36562 all species →	SERINE/ARGININE REPETITIVE MATRIX 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13172	SRRM2, SRM300; serine/arginine repetitive matrix protein 2	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.