Detailed information of g541.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MCG6890205.1, outer membrane protein transport protein [Gammaproteobacteria bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
F1QCV2Polyamine deacetylase HDAC10 OS=Danio rerio OX=7955 GN=hdac10 PE=1 SV=2
Q9Z2V5Protein deacetylase HDAC6 OS=Mus musculus OX=10090 GN=Hdac6 PE=1 SV=3
Q9UBN7Protein deacetylase HDAC6 OS=Homo sapiens OX=9606 GN=HDAC6 PE=1 SV=2
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity|HECT

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03349Toluene_XOuter membrane protein transport protein (OMPP1/FadL/TodX)FamilyInterproscan
PF01618MotA_ExbBMotA/TolQ/ExbB proton channel familyFamilyInterproscan
PF13193AMP-binding_CAMP-binding enzyme C-terminal domainDomainInterproscan
PF00501AMP-bindingAMP-binding enzymeFamilyInterproscan
PF00632HECTHECT-domain (ubiquitin-transferase)DomainInterproscan
PF00264TyrosinaseCommon central domain of tyrosinaseDomainInterproscan
PF13880Acetyltransf_13ESCO1/2 acetyl-transferaseDomainInterproscan
PF00850Hist_deacetylHistone deacetylase domainDomainInterproscan
PF03372Exo_endo_phosEndonuclease/Exonuclease/phosphatase familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR005017FamilyOuter membrane protein transport protein (OMPP1/FadL/TodX)Interproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR000540Conserved_siteFlagellar motor protein MotA, conserved siteInterproscan
IPR002898DomainMotA/TolQ/ExbB proton channelInterproscan
IPR047055FamilyMotility protein A-likeInterproscan
IPR001478DomainPDZ domainInterproscan
IPR036034Homologous_superfamilyPDZ superfamilyInterproscan
IPR025110DomainAMP-binding enzyme, C-terminal domainInterproscan
IPR042099Homologous_superfamilyANL, N-terminal domainInterproscan
IPR020845Conserved_siteAMP-binding, conserved siteInterproscan
IPR045851Homologous_superfamilyAMP-binding enzyme, C-terminal domain superfamilyInterproscan
IPR000873DomainAMP-dependent synthetase/ligase domainInterproscan
IPR000569DomainHECT domainInterproscan
IPR035983Homologous_superfamilyHECT, E3 ligase catalytic domainInterproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR008922Homologous_superfamilyDi-copper centre-containing domain superfamilyInterproscan
IPR002227DomainTyrosinase copper-binding domainInterproscan
IPR028009DomainN-acetyltransferase ESCO, acetyl-transferase domainInterproscan
IPR000286FamilyHistone deacetylase familyInterproscan
IPR023696Homologous_superfamilyUreohydrolase domain superfamilyInterproscan
IPR023801DomainHistone deacetylase domainInterproscan
IPR050284FamilyHistone deacetylase and polyamine deacetylaseInterproscan
IPR037138Homologous_superfamilyHistone deacetylase domain superfamilyInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR050410FamilyCCR4/nocturin mRNA turnover and transcriptionInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR35093OUTER MEMBRANE PROTEIN NMB0088-RELATEDInterproscan
PTHR30433CHEMOTAXIS PROTEIN MOTAInterproscan
PTHR43347ACYL-COA SYNTHETASEInterproscan
PTHR45884N-ACETYLTRANSFERASE ECOInterproscan
PTHR10625HISTONE DEACETYLASE HDAC1-RELATEDInterproscan
PTHR12121CARBON CATABOLITE REPRESSOR PROTEIN 4Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0015483Molecular Functionlong-chain fatty acid transporting porin activityInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0006935Biological ProcesschemotaxisInterproscan
GO:0016021Cellular ComponentmembraneInterproscan
GO:0071978Biological Processbacterial-type flagellum-dependent swarming motilityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005759Cellular Componentmitochondrial matrixInterproscan
GO:0050218Molecular Functionpropionate-CoA ligase activityInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0000785Cellular ComponentchromatinInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0007064Biological Processmitotic sister chromatid cohesionInterproscan
GO:0061733Molecular Functionpeptide-lysine-N-acetyltransferase activityInterproscan
GO:0000118Cellular Componenthistone deacetylase complexInterproscan
GO:0000122Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0004407Molecular Functionhistone deacetylase activityInterproscan
GO:0008134Molecular Functiontranscription factor bindingInterproscan
GO:0016575Biological Processobsolete histone deacetylationInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0000175Molecular Function3'-5'-RNA exonuclease activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01908ACSS3, prpE; propionyl-CoA synthetaseEC:6.2.1.17
Lipid biosynthesis proteinsko01004deepkoala

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