Gene detail

Detailed information of g5443.t1 in Tripedalia maipoensis

Genomic Location: scaffold_2:26922950...26958361
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g5443.t1

ATGAGTTCACATGAAGTTGTTGAACTTTCGGAAGACCATACTCTGGGAACTAACCCTGCCGCCACGTCAGTTGCAGAGGAAGCAAATAATAATAATGCAGACTCATGCAAACAAGGAGAGGGAGCCAAGGAAAGAATATGTTACACCCAGGAAGAGCTGCTTAACCTTAGAACTGCTCCTGCTTCACTGAAAAGACCAGCTGCGCTTGCAGAGGAGTTTTACTTGCAAAATGATGTCTGGGATCCCGGACAGTGGCATAAGGTACTCAATTCAGGAAGTTCTACACCACCTAATGAGCATAAAGGTGGTACAGAATTCAAAAAGGGTGACCTGTTTGGGGATTCAATCAATCTCACGCCTCAGAGGAAGAGTTTTCAAGATGGATGTCATGTACAAAACAAATCAGATACATCACTACCAGACTCGAGGTTACCATTTTCAAAACAGCAGAAGCTAGACTCCTACCAGCAGCCTTTACTAGAAGGAAAGAGCAGATTAACTGGAAGAGCTGCCGGACAGCGAAAATCTCTTGAGAAAGCATATTATAAGGAGAGGGATTTGGATCAGGACAGAAACATAATAAAGCTCGTTAGGGATCACGAAAGCGGTAAGATCATAAGAAAAGATCGAGACCTTAAACGACCAGAGCATTATCGCGGACCTTCAATCCGACATGCAGATTCTGAGTCAAGTCTACCAGAGTGGGCTGTTGATGGCCCCACCAGTCAGTCTGATACCATTGAACTGAAAGGATTTGACGATGATGCAGAACGAAGAGACTCCCTCAAAAAGCGGGGCTCCTTTTCTCGGGGGAATACAACGGACTCGGATCAAACTGATAAGACCAGAGAAGGCTTTCGTCAAGGCAGATCCTCGTCATCCACACTTAGTGGTGCCAGCAGTAAAAACAGCAATACAGGTGGTCTGAATGACAGTAACAAAGAAAACGAGAAGCCACCAAGCAACGTTGAAGCCGAAAAAGCACCTTCTCGACGAACAACACCTGTGGATAACTTCGATCTCAATGAATTATTTGATATGTTGGAACTCGTGCCCAGCGAAATGTTTGCAGATGAAGATTCAAGCGGGAAGAGCCGCTTCAGCAAGTGGTTTCACCAGGGACGATGCGACAGTAGATCAGGAAGTTTACCTTTGTTTCCAGATCCTTCAGCTACCATTGCTAGAGGTTTGTCCCCGGAAGAATCCAGCTTACTATCCAACTCTTATTTTACGCCGATTCAACCTGCGCCTCCATGTTCCGCACCTTCACCAGAGGTGCCTTCGTTATTGGACATACTACAGCGAGCAAGGAGCAACTCCAAGTCACAGCCAGTAAAGGAAATCAGGGGACGTATGAAAGTGAATGACATAGAGCCCCCAATGCACGGCACTTCCTCAACAAATAGTGGCACGGAGGAGAAGGACGGCAATCCCCAAGAGGAGGTTTCTGGCCAGTCAGCTTTTGAAAAACTTGTTCAAACCATGAAGAAATCAGGACAACTCCCGGAAAAACCAGCACCCGTGGTTACAGGCCTCCCGGACCATCTCCTTCCCAAACCTCCTAGAAAGACATCTCCTACGTTTGAAAAGCTAAAACGTCAACTCAGTAGATCTCCCTCCCCGCTCGCTTTCCTTAACAAGACTCTAATGTCTCAACAAGCAGGACTGTTAACGCCGGATTTCTTTAAGCAGTCACACATTCCCAAGACTCTGCCACCAAGCGAGTTTTTCAAGCAAGCGCAAAACGGTGAAAGAGTACCCCAGTCTGCCCCTCACGACTTCGCACCAGTCAACGCTCATGCAAGGCCCTTTATTGCTAGCGATGAGCGCACCACTCAGTCCCAACCGGTGGCAAAGGTTACGAAAGTACCAACTGCTTTTTTGCCTACGTCTGTCATGAAAAAAATGCACACAGACAAGGTTGAGAAAGAGCCCGTTGCCAAAGAAGACTTTCCTCGCGCTGTTGGACAGCTATTCGATTCAACGCGATTCCAGGATGACGCTCTTAAAGAACAATTGCATAGAGCTTCCCAGCTACCTTTTTCTTCCCCAAGCTCCAGCCGTGACTCCGTGGCTTCCATGTTTTCGTCGCCTTGTAGTACTAAATCGGCATCCATTGATGCCCCCACCAACACGCCCTGGGAAAACCCAAGTCACAGATTCGCATGTAACACTGTTTTGCCAGGCCGTCCACCTCTCAGTGCACCCAATACACCCGCTAACCGCAATATTAATTTGCTGAATCCCACAGTGCCACAAAGCGCTCCTGTGACACCTAGACGGAACGCAAGCACAGACCCTCCTACTGTTCAGCGTCTTGTAAACAACTCTGCATTTATGCCTCTCGGCGGCAATGCCCTGCAAAGCTTCCTAGATACTTCTAGACAAGAACGTAACGGAATCGATAAAATGGACAGTCTTACGCCGAATCAGGACAGCGATGTCTCGCAGGCAGACAGCGAAAAGGATTACATATCAAGTAATACGGGGACGTACCTGTTTCGCAGTCTCGGCACTTCAGGGCACAAGATATTGCCAGACTCGTTCTCATCATCCAGTTCAGCAATGCTGTCTTCTGCTGAAGCTAAGAAGTCTGATAAAGGTGGTGATAGCTCAAGTACTTCAATCCGACAGATTAAATCCTTATTTCACGGAGATGCCCTCTCTAATCACAGTGAATTAGCTCATACCGCGGATGTAGTCACAGACAAAATTCAACAGAGAAATATCATTGAAAACGTTTTTTCTACTACGGAGAGCGAGGAGAAGATTAAAGGAATGGTTTTTGGTGCTCAAGGTGATACCAAAGTAAAGGGACCAAATGGGCGATTCCAACAAGCTCAAACTGCATTTTCCGTGCCTCATTCCTCGTCGACTCCTTCCGTGCCTTCATCAGCTTGTAACTCAACGTATGAGACAAGTAGAGTCCCCCAGGCATTACATCCACCCATGCTCGATGATCTACGCGAAGCAAAAGAGGGCCTTCTGAAGCCAGATGTCGATACCCAGCTAACAAACAAAGCCGAATCTGCCCACAACTCATCTTTATCTGCTAAGAAGGGTTTAGGTGGAATGGCTTCATTCCCAGGCCACAAGCCCTCTAATGGCCCAAGGAAGCGTATTTCGCCTCCCATACCTACCCCTTTGCAGCCAAATGCTATCCCTGGTACGATTCCGTCTAATTTGATCATGAATCGTAACACTGGTATTGCTAATGCAGGAGCTGCCATTGCTGCCCAAGCTCTCGTTCACCAGCACATGTTGGCTCACGCTGCGCGGGCTCAGGTCCTTCAAGCTGCCCAGCTGTATCAGCAGCAACAACAGCAACAAGCTTTGCAAGCTCAAGTGCAAGCAGCCATAATGGCCCAAGCTTTCGCGCGAAACAGAGCTGTGATGTATAATCCTCGACCAATGATGTATCCGCCCTTAGGTGCTGTTGCGGGCCAGTCAAGAGCCCCAAATATTCAACCGCTCGTGCAACAGCCTGCGCCTCCAACTTCATTTTTACCACGTAACCCTTGTCCCCAAGGACTACCCCACCACAATATTAAGGACGACTCAAAGTCGGGCCTCCCCGTGACTTCAGACAGTTCACAGATCAATCCTCTTGCTAAGTGGTTTGGTAACGATATTCTGAAGAAGACGAAGCACAATCCAGTCGTAGATCCAACTGCCAAAGCAAAGATGATCTGTGTGGAGGAAATAGAGCAAATGCACTGA

Transcript

g5443.t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10477 all species →	EIF4E-T	Nucleocytoplasmic shuttling protein for mRNA cap-binding EIF4E	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018862 all species →	Family	Eukaryotic translation initiation factor 4E binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12269 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0017148 all species →	Biological Process	negative regulation of translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18728	EIF4ENIF1; eukaryotic translation initiation factor 4E transporter	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.